Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001156.1-P | Field mustard | nucleus | 71.04 | 98.4 |
| AT3G05590.1 | Thale cress | nucleus | 69.5 | 96.26 |
| Bra009940.1-P | Field mustard | cytosol | 67.57 | 93.58 |
| Bra036611.1-P | Field mustard | cytosol | 66.8 | 92.51 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 30.89 | 87.91 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 62.16 | 86.1 |
| PGSC0003DMT400081310 | Potato | nucleus | 61.78 | 85.56 |
| KRH33871 | Soybean | nucleus | 61.0 | 84.49 |
| KRH68205 | Soybean | nucleus | 60.62 | 83.96 |
| OQU92626 | Sorghum | cytosol | 60.23 | 83.42 |
| KRG96455 | Soybean | nucleus | 60.23 | 83.42 |
| KRG92914 | Soybean | nucleus | 60.23 | 83.42 |
| TraesCS2A01G109900.1 | Wheat | plastid | 59.85 | 82.89 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 59.46 | 82.35 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 59.46 | 82.35 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 59.46 | 82.35 |
| KRH68491 | Soybean | nucleus | 59.46 | 82.35 |
| EER97722 | Sorghum | cytosol | 59.46 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 46.72 | 82.31 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 59.07 | 81.82 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 59.07 | 81.82 |
| Zm00001d022462_P001 | Maize | plastid | 59.07 | 81.82 |
| EES17748 | Sorghum | cytosol | 59.07 | 81.38 |
| Os03t0341100-01 | Rice | nucleus | 58.69 | 81.28 |
| PGSC0003DMT400063593 | Potato | cytosol | 58.69 | 81.28 |
| Zm00001d009848_P001 | Maize | cytosol | 58.3 | 80.75 |
| Os05t0155100-01 | Rice | nucleus | 58.3 | 80.32 |
| CDY05183 | Canola | mitochondrion | 68.73 | 79.82 |
| TraesCS1D01G105500.2 | Wheat | golgi | 57.53 | 79.26 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 57.14 | 79.14 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 57.14 | 79.14 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 40.93 | 79.1 |
| GSMUA_Achr11P... | Banana | cytosol | 40.15 | 77.61 |
| Os07t0674700-01 | Rice | plasma membrane | 57.92 | 76.92 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 59.07 | 76.12 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 62.55 | 72.0 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 25.1 | 71.43 |
| KRG96775 | Soybean | mitochondrion, nucleus | 61.39 | 70.35 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 58.69 | 70.05 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 18.15 | 69.12 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 30.89 | 67.23 |
| Zm00001d037603_P002 | Maize | cytosol | 58.3 | 65.65 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 58.69 | 61.29 |
| Solyc09g025200.1.1 | Tomato | extracellular | 13.13 | 47.22 |
| Bra039423.1-P | Field mustard | cytosol | 20.46 | 44.92 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | EnsemblPlantsGene:Bra040533 | EnsemblPlants:Bra040533.1 | EnsemblPlants:Bra040533.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L18e/L15P_sf | UniProt:M4FHF5 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 |
| InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI000253ED9F | : | : |
Description
AT3G05590 (E=1e-098) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Coordinates
chrScaffold000215:-:49651..55265
Molecular Weight (calculated)
29047.5 Da
IEP (calculated)
11.092
GRAVY (calculated)
-0.590
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDRWGVEKT PMASGREKEV RPDEIHVSLE NDQMGSVSSK RSRNGREMVD KYPVGTLKIS AECNGLKKLQ ADYGIDLIAG GKSKKTKRTA PKSDDVYLKL
101: TVKLYRFLVR RTQSKFNAVI LKRLFMSKVN KAPLSLSRLV EFMTGKEDKI AVLVGTITDD LRVHEIPAIK VTALRFTERA RARIEKAGGE CLTFDQLALS
201: SPLGQNTVLL RGPKNSREAV KHFGPAPGVP HSHSKPYVRS KGRKFEKARG KRKSRGFKV
101: TVKLYRFLVR RTQSKFNAVI LKRLFMSKVN KAPLSLSRLV EFMTGKEDKI AVLVGTITDD LRVHEIPAIK VTALRFTERA RARIEKAGGE CLTFDQLALS
201: SPLGQNTVLL RGPKNSREAV KHFGPAPGVP HSHSKPYVRS KGRKFEKARG KRKSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.