Factsheet for Zm00001d022462_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT5G27850.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT5G27850.1	Zm00001d053016_P002	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97722	Sorghum	cytosol	97.86	97.86
Zm00001d009848_P001	Maize	cytosol	94.65	94.65
TraesCS2D01G110100.1	Wheat	golgi, unclear	93.05	93.05
TraesCS2B01G127900.1	Wheat	cytosol	93.05	93.05
TraesCS2A01G109900.1	Wheat	plastid	93.05	93.05
HORVU2Hr1G018820.1	Barley	cytosol	92.51	92.51
Os07t0674700-01	Rice	plasma membrane	95.19	91.28
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	44.38	91.21
GSMUA_Achr5P27080_001	Banana	cytosol	61.5	85.82
GSMUA_Achr11P...	Banana	cytosol	60.96	85.07
VIT_14s0060g01930.t01	Wine grape	cytosol	85.03	85.03
CDY36892	Canola	cytosol	27.27	85.0
CDY05185	Canola	cytosol	27.27	85.0
AT5G27850.1	Thale cress	nucleus	83.96	83.96
KRG96455	Soybean	nucleus	83.96	83.96
KRH68205	Soybean	nucleus	83.42	83.42
Bra001156.1-P	Field mustard	nucleus	83.42	83.42
AT3G05590.1	Thale cress	nucleus	82.89	82.89
PGSC0003DMT400081310	Potato	nucleus	82.89	82.89
HORVU2Hr1G018840.4	Barley	cytosol	40.11	82.42
KRG92914	Soybean	nucleus	82.35	82.35
KRH33871	Soybean	nucleus	82.35	82.35
KRH68491	Soybean	nucleus	81.82	81.82
Solyc09g075290.2.1	Tomato	nucleus	81.82	81.82
Bra036611.1-P	Field mustard	cytosol	81.82	81.82
Bra009940.1-P	Field mustard	cytosol	81.82	81.82
PGSC0003DMT400063593	Potato	cytosol	81.28	81.28
Solyc01g099900.2.1	Tomato	nucleus	80.75	80.75
GSMUA_Achr2P01730_001	Banana	cytosol	86.63	80.6
VIT_05s0077g02070.t01	Wine grape	cytosol	60.96	77.55
CDY25018	Canola	cytosol	81.28	77.16
Zm00001d037603_P002	Maize	cytosol	94.65	76.96
AT2G47570.1	Thale cress	cytosol, nucleus	76.47	76.88
CDY66803	Canola	cytosol	81.82	76.5
VIT_05s0077g02060.t01	Wine grape	mitochondrion	27.27	75.0
CDX74138	Canola	extracellular	83.42	73.24
CDX99969	Canola	cytosol, plastid	81.82	72.86
CDY19736	Canola	cytosol	81.82	71.16
VIT_07s0005g00690.t01	Wine grape	plastid	83.96	69.78
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.89	68.28
KRG96775	Soybean	mitochondrion, nucleus	81.82	67.7
CDY05183	Canola	mitochondrion	79.68	66.82
CDX80616	Canola	cytosol	81.82	65.95
GSMUA_Achr8P10280_001	Banana	cytosol	85.03	64.11
CDY18813	Canola	cytosol, mitochondrion	83.42	62.65
VIT_14s0036g01220.t01	Wine grape	cytosol	37.97	59.66
Bra040533.1-P	Field mustard	nucleus	81.82	59.07
Solyc09g025200.1.1	Tomato	extracellular	20.32	52.78
CDY46988	Canola	cytosol	17.11	38.55
CDY27753	Canola	cytosol, mitochondrion	22.99	36.44
Bra039423.1-P	Field mustard	cytosol	22.99	36.44

Protein Annotations

EntrezGene:100192878	MapMan:17.1.2.1.18	Gene3D:3.100.10.10	UniProt:B6SJ08	EMBL:EU952723	EMBL:EU959818
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:L18e/L15P_sf	ProteinID:ONM60664.1	PFAM:PF17135	ScanProsite:PS01106
PANTHER:PTHR10934	PANTHER:PTHR10934:SF3	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080
UniParc:UPI000182AF1D	EnsemblPlantsGene:Zm00001d022462	EnsemblPlants:Zm00001d022462_P001	EnsemblPlants:Zm00001d022462_T001	:	:

Description

60S ribosomal protein L18-3

Coordinates

chr7:-:178148395..178150867

Molecular Weight (calculated)

21044.1 Da

IEP (calculated)

12.027

GRAVY (calculated)

-0.437

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPK SDDVYLKLLV KLYRFLVRRT KSNFNAVILK RLFMSKTNRP PLSMRRLVRF MEGKGDQIAV IVGTVTDDKR ISEVPAMKVC
101: ALRFTETARA RIINAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVRH FGPAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.