Factsheet for Bra001156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G05590.1	Thale cress	nucleus	97.86	97.86
Bra009940.1-P	Field mustard	cytosol	94.65	94.65
Bra036611.1-P	Field mustard	cytosol	93.58	93.58
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	43.85	90.11
CDX74138	Canola	extracellular	100.0	87.79
VIT_14s0060g01930.t01	Wine grape	cytosol	87.7	87.7
PGSC0003DMT400081310	Potato	nucleus	87.17	87.17
KRH33871	Soybean	nucleus	86.1	86.1
KRH68205	Soybean	nucleus	85.56	85.56
OQU92626	Sorghum	cytosol	85.03	85.03
KRG96455	Soybean	nucleus	85.03	85.03
KRG92914	Soybean	nucleus	85.03	85.03
TraesCS2A01G109900.1	Wheat	plastid	84.49	84.49
VIT_05s0077g02070.t01	Wine grape	cytosol	66.31	84.35
HORVU2Hr1G018820.1	Barley	cytosol	83.96	83.96
TraesCS2D01G110100.1	Wheat	golgi, unclear	83.96	83.96
TraesCS2B01G127900.1	Wheat	cytosol	83.96	83.96
EER97722	Sorghum	cytosol	83.96	83.96
KRH68491	Soybean	nucleus	83.96	83.96
TraesCS4D01G169400.1	Wheat	cytosol, unclear	83.42	83.42
TraesCS4B01G166800.1	Wheat	cytosol	83.42	83.42
Zm00001d022462_P001	Maize	plastid	83.42	83.42
EES17748	Sorghum	cytosol	83.42	82.98
Os03t0341100-01	Rice	nucleus	82.89	82.89
PGSC0003DMT400063593	Potato	cytosol	82.89	82.89
Zm00001d009848_P001	Maize	cytosol	82.35	82.35
Os05t0155100-01	Rice	nucleus	82.35	81.91
GSMUA_Achr5P27080_001	Banana	cytosol	58.29	81.34
TraesCS1D01G105500.2	Wheat	golgi	81.28	80.85
TraesCS1A01G096500.2	Wheat	cytosol	80.75	80.75
TraesCS1B01G127200.1	Wheat	cytosol	80.75	80.75
GSMUA_Achr11P...	Banana	cytosol	57.22	79.85
Os07t0674700-01	Rice	plasma membrane	81.82	78.46
GSMUA_Achr2P01730_001	Banana	cytosol	82.35	76.62
CDY18813	Canola	cytosol, mitochondrion	100.0	75.1
VIT_07s0005g00690.t01	Wine grape	plastid	87.17	72.44
HORVU2Hr1G018840.4	Barley	cytosol	34.76	71.43
Bra040533.1-P	Field mustard	nucleus	98.4	71.04
VIT_05s0077g02060.t01	Wine grape	mitochondrion	25.67	70.59
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	81.82	70.51
KRG96775	Soybean	mitochondrion, nucleus	84.49	69.91
VIT_14s0036g01220.t01	Wine grape	cytosol	43.32	68.07
Zm00001d037603_P002	Maize	cytosol	82.35	66.96
GSMUA_Achr8P10280_001	Banana	cytosol	81.82	61.69
Solyc09g025200.1.1	Tomato	extracellular	19.25	50.0
Bra039423.1-P	Field mustard	cytosol	26.2	41.53

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EnsemblPlantsGene:Bra001156	EnsemblPlants:Bra001156.1	EnsemblPlants:Bra001156.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:L18e/L15P_sf	UniProt:M4CAC7	PFAM:PF17135	PANTHER:PTHR10934	PANTHER:PTHR10934:SF9
InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0002540A2A	:	:

Description

AT3G05590 (E=2e-100) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome

Coordinates

chrA03:+:15008776..15009735

Molecular Weight (calculated)

20953.0 Da

IEP (calculated)

11.623

GRAVY (calculated)

-0.416

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT QSKFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAIKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRSKG RKFEKARGKR KSRGFKV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.