Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G096500.2 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS1D01G105500.2 | Wheat | golgi | 98.4 | 97.87 |
| Zm00001d009848_P001 | Maize | cytosol | 93.05 | 93.05 |
| EES17748 | Sorghum | cytosol | 91.44 | 90.96 |
| Os05t0155100-01 | Rice | nucleus | 90.91 | 90.43 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 90.37 | 90.37 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 89.84 | 89.84 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 43.32 | 89.01 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 98.4 | 84.79 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 83.96 | 83.96 |
| KRH33871 | Soybean | nucleus | 82.35 | 82.35 |
| Solyc09g075290.2.1 | Tomato | nucleus | 81.82 | 81.82 |
| PGSC0003DMT400081310 | Potato | nucleus | 81.82 | 81.82 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 58.29 | 81.34 |
| GSMUA_Achr11P... | Banana | cytosol | 58.29 | 81.34 |
| KRG92914 | Soybean | nucleus | 81.28 | 81.28 |
| KRG96455 | Soybean | nucleus | 81.28 | 81.28 |
| Bra036611.1-P | Field mustard | cytosol | 80.75 | 80.75 |
| Bra001156.1-P | Field mustard | nucleus | 80.75 | 80.75 |
| KRH68205 | Soybean | nucleus | 80.75 | 80.75 |
| AT3G05590.1 | Thale cress | nucleus | 80.21 | 80.21 |
| CDY36892 | Canola | cytosol | 25.67 | 80.0 |
| CDY05185 | Canola | cytosol | 25.67 | 80.0 |
| Bra009940.1-P | Field mustard | cytosol | 79.68 | 79.68 |
| AT5G27850.1 | Thale cress | nucleus | 79.68 | 79.68 |
| KRH68491 | Soybean | nucleus | 78.61 | 78.61 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 28.34 | 77.94 |
| PGSC0003DMT400063593 | Potato | cytosol | 77.01 | 77.01 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 82.35 | 76.62 |
| Solyc01g099900.2.1 | Tomato | nucleus | 76.47 | 76.47 |
| CDY25018 | Canola | cytosol | 80.21 | 76.14 |
| Zm00001d037603_P002 | Maize | cytosol | 93.05 | 75.65 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 74.87 | 75.27 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 58.82 | 74.83 |
| CDY66803 | Canola | cytosol | 79.14 | 74.0 |
| CDX99969 | Canola | cytosol, plastid | 80.75 | 71.9 |
| CDX74138 | Canola | extracellular | 80.75 | 70.89 |
| CDY19736 | Canola | cytosol | 80.75 | 70.23 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 83.96 | 69.78 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 80.75 | 66.52 |
| KRG96775 | Soybean | mitochondrion, nucleus | 79.68 | 65.93 |
| CDX80616 | Canola | cytosol | 80.21 | 64.66 |
| CDY05183 | Canola | mitochondrion | 77.01 | 64.57 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 81.82 | 61.69 |
| CDY18813 | Canola | cytosol, mitochondrion | 80.75 | 60.64 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 36.9 | 57.98 |
| Bra040533.1-P | Field mustard | nucleus | 79.14 | 57.14 |
| Solyc09g025200.1.1 | Tomato | extracellular | 19.25 | 50.0 |
| CDY46988 | Canola | cytosol | 17.11 | 38.55 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.46 | 35.59 |
| Bra039423.1-P | Field mustard | cytosol | 22.46 | 35.59 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| ScanProsite:PS01106 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF5 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | InterPro:Ribosomal_L18e_CS |
| SUPFAM:SSF52080 | EnsemblPlantsGene:TraesCS1B01G127200 | EnsemblPlants:TraesCS1B01G127200.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:155748211..155751136
Molecular Weight (calculated)
21162.3 Da
IEP (calculated)
12.111
GRAVY (calculated)
-0.496
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGR NKRTKRVAPK SDDVYLKLLV KLYRFLVRRT KSKFNAVILK RLFMSKTNRP PLSMRRLSNF MKGKEKNIAV VVGTITDDMR IQEVPAMKVT
101: ALRFTETARA RIVNAGGECL TFDQLALRAP TGENTILLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
101: ALRFTETARA RIVNAGGECL TFDQLALRAP TGENTILLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
001: IDLIAGGKSK KTKRTEPKSD DVYLKLLVKA NRYLVRRTES KFNAVILKRL FMSKVNKAPL SLSRLVRYMD GKDGKIAVIV GTVTDDVRIE DVPALTVTAL
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
Arabidopsis Description
Ribosomal protein L18e/L15 superfamily protein [Source:TAIR;Acc:AT2G47570]
SUBAcon: [nucleus,cytosol]
SUBAcon: [nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.