Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G05590.1 | Thale cress | nucleus | 80.18 | 97.33 |
| CDY05185 | Canola | cytosol | 24.23 | 91.67 |
| CDY36892 | Canola | cytosol | 24.23 | 91.67 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 36.12 | 90.11 |
| CDY25018 | Canola | cytosol | 77.97 | 89.85 |
| CDX74138 | Canola | extracellular | 83.7 | 89.2 |
| CDY66803 | Canola | cytosol | 77.53 | 88.0 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 72.25 | 87.7 |
| PGSC0003DMT400081310 | Potato | nucleus | 71.81 | 87.17 |
| KRH33871 | Soybean | nucleus | 70.48 | 85.56 |
| KRH68205 | Soybean | nucleus | 70.04 | 85.03 |
| KRG92914 | Soybean | nucleus | 69.6 | 84.49 |
| TraesCS2A01G109900.1 | Wheat | plastid | 69.6 | 84.49 |
| OQU92626 | Sorghum | cytosol | 69.6 | 84.49 |
| KRG96455 | Soybean | nucleus | 69.6 | 84.49 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 54.63 | 84.35 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 69.16 | 83.96 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 69.16 | 83.96 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 69.16 | 83.96 |
| CDX99969 | Canola | cytosol, plastid | 77.53 | 83.81 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 68.72 | 83.42 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 68.72 | 83.42 |
| KRH68491 | Soybean | nucleus | 68.72 | 83.42 |
| EER97722 | Sorghum | cytosol | 68.72 | 83.42 |
| EES17748 | Sorghum | cytosol | 68.72 | 82.98 |
| Zm00001d022462_P001 | Maize | plastid | 68.28 | 82.89 |
| Zm00001d009848_P001 | Maize | cytosol | 67.84 | 82.35 |
| Os03t0341100-01 | Rice | nucleus | 67.84 | 82.35 |
| PGSC0003DMT400063593 | Potato | cytosol | 67.84 | 82.35 |
| CDY19736 | Canola | cytosol | 77.97 | 82.33 |
| Os05t0155100-01 | Rice | nucleus | 67.84 | 81.91 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 48.02 | 81.34 |
| TraesCS1D01G105500.2 | Wheat | golgi | 66.96 | 80.85 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 66.52 | 80.75 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 66.52 | 80.75 |
| CDY05183 | Canola | mitochondrion | 79.3 | 80.72 |
| GSMUA_Achr11P... | Banana | cytosol | 47.14 | 79.85 |
| Os07t0674700-01 | Rice | plasma membrane | 66.96 | 77.95 |
| CDX80616 | Canola | cytosol | 78.85 | 77.16 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 68.28 | 77.11 |
| CDY18813 | Canola | cytosol, mitochondrion | 84.58 | 77.11 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 73.13 | 73.78 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 28.63 | 71.43 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 67.84 | 70.97 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 21.15 | 70.59 |
| KRG96775 | Soybean | mitochondrion, nucleus | 69.6 | 69.91 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 35.68 | 68.07 |
| Zm00001d037603_P002 | Maize | cytosol | 67.84 | 66.96 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 67.84 | 62.1 |
| CDY46988 | Canola | cytosol | 16.3 | 44.58 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.91 | 44.07 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:A0A078HVC7 | UniProt:A0A078HVC7 | EnsemblPlants:CDY40718 | ProteinID:CDY40718 |
| ProteinID:CDY40718.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00071610001 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EDD15D |
Description
BnaC03g34340DBnaC03g34340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVC7]
Coordinates
chrLK032477:+:294155..295459
Molecular Weight (calculated)
25230.2 Da
IEP (calculated)
11.538
GRAVY (calculated)
-0.337
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLTHKTQHG LNWTSIILGL QGPLLELTST AAAPHLPDAT MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT QSKFNAVILK RLFMSKVNKA
101: PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAIKVT ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGRAPGVPHS
201: HSKPYVRSKG RKFEKARGKR KSRGFKV
101: PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAIKVT ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGRAPGVPHS
201: HSKPYVRSKG RKFEKARGKR KSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.