Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001156.1-P | Field mustard | nucleus | 97.86 | 97.86 |
| AT5G27850.1 | Thale cress | nucleus | 95.72 | 95.72 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 43.85 | 90.11 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 86.63 | 86.63 |
| PGSC0003DMT400081310 | Potato | nucleus | 86.63 | 86.63 |
| KRH33871 | Soybean | nucleus | 86.1 | 86.1 |
| CDX74138 | Canola | extracellular | 97.86 | 85.92 |
| KRH68205 | Soybean | nucleus | 85.56 | 85.56 |
| KRG96455 | Soybean | nucleus | 85.03 | 85.03 |
| KRG92914 | Soybean | nucleus | 85.03 | 85.03 |
| OQU92626 | Sorghum | cytosol | 84.49 | 84.49 |
| KRH68491 | Soybean | nucleus | 83.96 | 83.96 |
| TraesCS2A01G109900.1 | Wheat | plastid | 83.96 | 83.96 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 65.78 | 83.67 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 83.42 | 83.42 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 83.42 | 83.42 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 83.42 | 83.42 |
| EER97722 | Sorghum | cytosol | 83.42 | 83.42 |
| Zm00001d022462_P001 | Maize | plastid | 82.89 | 82.89 |
| PGSC0003DMT400063593 | Potato | cytosol | 82.89 | 82.89 |
| EES17748 | Sorghum | cytosol | 82.89 | 82.45 |
| Os03t0341100-01 | Rice | nucleus | 82.35 | 82.35 |
| Zm00001d009848_P001 | Maize | cytosol | 81.82 | 81.82 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 81.82 | 81.82 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 81.82 | 81.82 |
| Os05t0155100-01 | Rice | nucleus | 81.82 | 81.38 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 58.29 | 81.34 |
| TraesCS1D01G105500.2 | Wheat | golgi | 80.75 | 80.32 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 80.21 | 80.21 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 80.21 | 80.21 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 97.33 | 80.18 |
| GSMUA_Achr11P... | Banana | cytosol | 56.68 | 79.1 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 78.61 | 79.03 |
| CDY05183 | Canola | mitochondrion | 93.58 | 78.48 |
| Os07t0674700-01 | Rice | plasma membrane | 81.28 | 77.95 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 81.82 | 76.12 |
| CDY18813 | Canola | cytosol, mitochondrion | 97.86 | 73.49 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 86.1 | 71.56 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 34.22 | 70.33 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 81.28 | 70.05 |
| KRG96775 | Soybean | mitochondrion, nucleus | 84.49 | 69.91 |
| Bra040533.1-P | Field mustard | nucleus | 96.26 | 69.5 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 25.13 | 69.12 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 43.32 | 68.07 |
| Zm00001d037603_P002 | Maize | cytosol | 81.82 | 66.52 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 80.75 | 60.89 |
| Solyc09g025200.1.1 | Tomato | extracellular | 19.25 | 50.0 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | EntrezGene:819725 | UniProt:A0A178V8M9 | ProteinID:AAF26138.1 | ProteinID:AEE74263.1 |
| ArrayExpress:AT3G05590 | EnsemblPlantsGene:AT3G05590 | RefSeq:AT3G05590 | TAIR:AT3G05590 | RefSeq:AT3G05590-TAIR-G | EnsemblPlants:AT3G05590.1 |
| TAIR:AT3G05590.1 | EMBL:AY037224 | EMBL:AY060533 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 |
| GO:GO:0030529 | InterPro:L18e/L15P_sf | RefSeq:NP_187210.1 | ProteinID:OAP02088.1 | UniProt:P42791 | PFAM:PF17135 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | Symbol:RPL18 | InterPro:Ribosomal_L18e |
| InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | EMBL:U15741 | UniParc:UPI0000133C63 | : | : |
Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
Coordinates
chr3:+:1621355..1623052
Molecular Weight (calculated)
20927.0 Da
IEP (calculated)
11.623
GRAVY (calculated)
-0.427
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.