Factsheet for Zm00001d009848_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT5G27850.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT5G27850.1	Zm00001d053016_P002	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17748	Sorghum	cytosol	98.4	97.87
Os05t0155100-01	Rice	nucleus	96.26	95.74
Zm00001d022462_P001	Maize	plastid	94.65	94.65
TraesCS1B01G127200.1	Wheat	cytosol	93.05	93.05
TraesCS1A01G096500.2	Wheat	cytosol	93.05	93.05
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	44.92	92.31
TraesCS1D01G105500.2	Wheat	golgi	91.44	90.96
GSMUA_Achr5P27080_001	Banana	cytosol	62.03	86.57
GSMUA_Achr11P...	Banana	cytosol	62.03	86.57
VIT_14s0060g01930.t01	Wine grape	cytosol	85.03	85.03
PGSC0003DMT400081310	Potato	nucleus	83.42	83.42
CDY05185	Canola	cytosol	26.74	83.33
CDY36892	Canola	cytosol	26.74	83.33
KRH68491	Soybean	nucleus	82.35	82.35
Solyc09g075290.2.1	Tomato	nucleus	82.35	82.35
KRG96455	Soybean	nucleus	82.35	82.35
Bra001156.1-P	Field mustard	nucleus	82.35	82.35
AT5G27850.1	Thale cress	nucleus	82.35	82.35
KRH68205	Soybean	nucleus	81.82	81.82
KRH33871	Soybean	nucleus	81.82	81.82
KRG92914	Soybean	nucleus	81.82	81.82
Bra036611.1-P	Field mustard	cytosol	81.82	81.82
AT3G05590.1	Thale cress	nucleus	81.82	81.82
Zm00001d037603_P002	Maize	cytosol	100.0	81.3
GSMUA_Achr2P01730_001	Banana	cytosol	87.17	81.09
Bra009940.1-P	Field mustard	cytosol	80.75	80.75
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	91.44	78.8
PGSC0003DMT400063593	Potato	cytosol	78.07	78.07
VIT_05s0077g02060.t01	Wine grape	mitochondrion	28.34	77.94
Solyc01g099900.2.1	Tomato	nucleus	77.54	77.54
VIT_05s0077g02070.t01	Wine grape	cytosol	60.43	76.87
CDY25018	Canola	cytosol	80.75	76.65
AT2G47570.1	Thale cress	cytosol, nucleus	75.94	76.34
CDY66803	Canola	cytosol	80.75	75.5
CDX99969	Canola	cytosol, plastid	81.82	72.86
CDX74138	Canola	extracellular	82.35	72.3
CDY19736	Canola	cytosol	81.82	71.16
VIT_07s0005g00690.t01	Wine grape	plastid	83.96	69.78
KRG96775	Soybean	mitochondrion, nucleus	82.35	68.14
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.35	67.84
CDY05183	Canola	mitochondrion	78.61	65.92
CDX80616	Canola	cytosol	81.28	65.52
GSMUA_Achr8P10280_001	Banana	cytosol	86.1	64.92
CDY18813	Canola	cytosol, mitochondrion	82.35	61.85
VIT_14s0036g01220.t01	Wine grape	cytosol	37.43	58.82
Bra040533.1-P	Field mustard	nucleus	80.75	58.3
Solyc09g025200.1.1	Tomato	extracellular	19.79	51.39
CDY46988	Canola	cytosol	16.58	37.35
Bra039423.1-P	Field mustard	cytosol	22.99	36.44
CDY27753	Canola	cytosol, mitochondrion	22.99	36.44

Protein Annotations

EntrezGene:100194344	EntrezGene:103635488	MapMan:17.1.2.1.18	Gene3D:3.100.10.10	ProteinID:AQK84424.1	ProteinID:AQK84429.1
ProteinID:AQK92804.1	UniProt:B6SJC8	EMBL:BT083784	EMBL:EU952843	EMBL:EU962669	EMBL:EU967471
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EMBL:KF263678	InterPro:L18e/L15P_sf	PFAM:PF17135	ScanProsite:PS01106
PANTHER:PTHR10934	PANTHER:PTHR10934:SF5	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080
UniParc:UPI000182B2B0	EnsemblPlantsGene:Zm00001d009848	EnsemblPlants:Zm00001d009848_P001	EnsemblPlants:Zm00001d009848_T001	:	:

Description

60S ribosomal protein L18-3

Coordinates

chr8:+:84947841..84951081

Molecular Weight (calculated)

21144.3 Da

IEP (calculated)

11.980

GRAVY (calculated)

-0.495

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPK SDDVYLKLLV KLYRFLVRRT KSNFNAVILK RLFMSKTNRP PISMRRLVKF MEGKEKNIAV IVGTVTDDKR IQEVPAMKVT
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGENTVLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.