Factsheet for Solyc01g099900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063593	Potato	cytosol	99.47	99.47
Solyc09g075290.2.1	Tomato	nucleus	88.77	88.77
KRH33871	Soybean	nucleus	86.63	86.63
KRG92914	Soybean	nucleus	86.1	86.1
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	41.71	85.71
KRH68491	Soybean	nucleus	85.56	85.56
VIT_14s0060g01930.t01	Wine grape	cytosol	85.03	85.03
Zm00001d022462_P001	Maize	plastid	80.75	80.75
EER97722	Sorghum	cytosol	80.75	80.75
OQU92626	Sorghum	cytosol	80.75	80.75
TraesCS2B01G127900.1	Wheat	cytosol	79.14	79.14
TraesCS2A01G109900.1	Wheat	plastid	79.14	79.14
TraesCS2D01G110100.1	Wheat	golgi, unclear	79.14	79.14
TraesCS4B01G166800.1	Wheat	cytosol	78.61	78.61
HORVU2Hr1G018820.1	Barley	cytosol	78.61	78.61
GSMUA_Achr5P27080_001	Banana	cytosol	56.15	78.36
EES17748	Sorghum	cytosol	78.61	78.19
Os03t0341100-01	Rice	nucleus	78.07	78.07
Os05t0155100-01	Rice	nucleus	78.07	77.66
GSMUA_Achr11P...	Banana	cytosol	55.62	77.61
TraesCS4D01G169400.1	Wheat	cytosol, unclear	77.54	77.54
Zm00001d009848_P001	Maize	cytosol	77.54	77.54
TraesCS1D01G105500.2	Wheat	golgi	77.01	76.6
TraesCS1A01G096500.2	Wheat	cytosol	76.47	76.47
TraesCS1B01G127200.1	Wheat	cytosol	76.47	76.47
Os07t0674700-01	Rice	plasma membrane	78.61	75.38
GSMUA_Achr2P01730_001	Banana	cytosol	80.21	74.63
KRG96775	Soybean	mitochondrion, nucleus	85.56	70.8
VIT_05s0077g02060.t01	Wine grape	mitochondrion	25.67	70.59
HORVU2Hr1G018840.4	Barley	cytosol	33.16	68.13
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	76.47	65.9
Zm00001d037603_P002	Maize	cytosol	77.54	63.04
GSMUA_Achr8P10280_001	Banana	cytosol	80.75	60.89
Solyc09g025200.1.1	Tomato	extracellular	22.99	59.72

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:K4B124	InterPro:L18e/L15P_sf	PFAM:PF17135
PANTHER:PTHR10934	PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	EnsemblPlantsGene:Solyc01g099900.2
EnsemblPlants:Solyc01g099900.2.1	UniParc:UPI000276912C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:90026075..90029036

Molecular Weight (calculated)

20763.8 Da

IEP (calculated)

11.429

GRAVY (calculated)

-0.480

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLKAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLARRT GSKFNAVILK RLFMSKINKP PLSLSRLISY AEGKGDKTVV LVGTVTDDVR AYEVPKLKVC
101: ALKFTKTARA RIEKAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRAKG RKFERARGKR KSRGYKA

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.