Factsheet for GSMUA_Achr5P27080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	66.42	97.8
GSMUA_Achr11P...	Banana	cytosol	95.52	95.52
VIT_05s0077g02060.t01	Wine grape	mitochondrion	39.55	77.94
CDY05185	Canola	cytosol	33.58	75.0
CDY36892	Canola	cytosol	33.58	75.0
GSMUA_Achr11P...	Banana	endoplasmic reticulum	34.33	67.65
GSMUA_Achr2P01730_001	Banana	cytosol	96.27	64.18
OQU92626	Sorghum	cytosol	88.06	63.1
EES17748	Sorghum	cytosol	88.06	62.77
VIT_14s0060g01930.t01	Wine grape	cytosol	87.31	62.57
EER97722	Sorghum	cytosol	86.57	62.03
KRG96455	Soybean	nucleus	86.57	62.03
Zm00001d009848_P001	Maize	cytosol	86.57	62.03
TraesCS4B01G166800.1	Wheat	cytosol	86.57	62.03
TraesCS4D01G169400.1	Wheat	cytosol, unclear	86.57	62.03
KRH33871	Soybean	nucleus	85.82	61.5
TraesCS2D01G110100.1	Wheat	golgi, unclear	85.82	61.5
KRH68205	Soybean	nucleus	85.82	61.5
KRH68491	Soybean	nucleus	85.82	61.5
Os03t0341100-01	Rice	nucleus	85.82	61.5
Zm00001d022462_P001	Maize	plastid	85.82	61.5
TraesCS2B01G127900.1	Wheat	cytosol	85.82	61.5
HORVU2Hr1G018820.1	Barley	cytosol	85.82	61.5
TraesCS2A01G109900.1	Wheat	plastid	85.82	61.5
KRG92914	Soybean	nucleus	85.07	60.96
Os05t0155100-01	Rice	nucleus	85.07	60.64
PGSC0003DMT400081310	Potato	nucleus	84.33	60.43
Solyc09g075290.2.1	Tomato	nucleus	82.84	59.36
Os07t0674700-01	Rice	plasma membrane	85.82	58.97
AT5G27850.1	Thale cress	nucleus	82.09	58.82
TraesCS1D01G105500.2	Wheat	golgi	82.09	58.51
TraesCS1A01G096500.2	Wheat	cytosol	81.34	58.29
TraesCS1B01G127200.1	Wheat	cytosol	81.34	58.29
Bra036611.1-P	Field mustard	cytosol	81.34	58.29
Bra001156.1-P	Field mustard	nucleus	81.34	58.29
AT3G05590.1	Thale cress	nucleus	81.34	58.29
Bra009940.1-P	Field mustard	cytosol	79.85	57.22
PGSC0003DMT400063593	Potato	cytosol	79.1	56.68
Solyc01g099900.2.1	Tomato	nucleus	78.36	56.15
CDY25018	Canola	cytosol	80.6	54.82
AT2G47570.1	Thale cress	cytosol, nucleus	74.63	53.76
CDY66803	Canola	cytosol	79.85	53.5
GSMUA_Achr8P10280_001	Banana	cytosol	96.27	52.02
CDX99969	Canola	cytosol, plastid	81.34	51.9
VIT_07s0005g00690.t01	Wine grape	plastid	86.57	51.56
CDX74138	Canola	extracellular	81.34	51.17
KRG96775	Soybean	mitochondrion, nucleus	85.82	50.88
CDY19736	Canola	cytosol	81.34	50.7
Zm00001d037603_P002	Maize	cytosol	86.57	50.43
VIT_05s0077g02070.t01	Wine grape	cytosol	55.22	50.34
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	81.34	50.23
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.34	48.02
CDY05183	Canola	mitochondrion	79.85	47.98
Solyc09g025200.1.1	Tomato	extracellular	25.37	47.22
CDX80616	Canola	cytosol	80.6	46.55
CDY18813	Canola	cytosol, mitochondrion	81.34	43.78
Bra040533.1-P	Field mustard	nucleus	79.1	40.93
VIT_14s0036g01220.t01	Wine grape	cytosol	26.87	30.25
HORVU2Hr1G018840.4	Barley	cytosol	13.43	19.78
CDY46988	Canola	cytosol	3.73	6.02
GSMUA_Achr11P...	Banana	endoplasmic reticulum	1.49	5.13
CDY27753	Canola	cytosol, mitochondrion	0.75	0.85
Bra039423.1-P	Field mustard	cytosol	0.75	0.85

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G27080_001	EnsemblPlants:GSMUA_Achr5P27080_001
EnsemblPlants:GSMUA_Achr5T27080_001	InterPro:L18e/L15P_sf	UniProt:M0T233	PFAM:PF17135	PANTHER:PTHR10934	PANTHER:PTHR10934:SF5
InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI000294B6C0	SEG:seg	:

Description

60S ribosomal protein L18-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27080_001]

Coordinates

chr5:+:27682982..27686029

Molecular Weight (calculated)

15039.6 Da

IEP (calculated)

11.851

GRAVY (calculated)

-0.543

Length

134 amino acids

Sequence
(BLAST)

001: MSKINRPPIS LKRLITFMQG KDDKIAVIVG TVTDDKRVYE VPAMKVTALR FTETARARIL KAGGECLTFD QLALRAPLGQ NTVLLRGPKN AREAVKHFGK
101: APGVPHSHTK PYVRSKGRKY ERARGRRNSR GFRV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.