Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 4
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P01730_001 | Banana | cytosol | 69.23 | 13.43 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 69.23 | 10.89 |
| VIT_00s0283g00090.t01 | Wine grape | nucleus | 10.26 | 1.99 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 5.13 | 1.49 |
| GSMUA_Achr11P... | Banana | cytosol | 2.56 | 0.75 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 0.0 | 0.0 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P05480_001 | EnsemblPlants:GSMUA_Achr11T05480_001 | EnsemblPlantsGene:GSMUA_Achr11G05480_001 | Gene3D:3.100.10.10 | InterPro:Ribosomal_L18e/L15P | PFAM:PF17135 |
| UniParc:UPI0002955D72 | UniProt:M0RPM8 | MapMan:35.2 | : | : | : |
Description
Putative 60S ribosomal protein L18-1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G05480_001]
Coordinates
chr11:-:4071451..4071789
Molecular Weight (calculated)
4589.5 Da
IEP (calculated)
4.793
GRAVY (calculated)
-0.138
Length
39 amino acids
Sequence
(BLAST)
(BLAST)
1: MSDDVYLMLL VKLSRFLVRR TGSKFDAVIT EEAFHEQDQ
001: IDLIAGGKSK KTKRTEPKSD DVYLKLLVKA NRYLVRRTES KFNAVILKRL FMSKVNKAPL SLSRLVRYMD GKDGKIAVIV GTVTDDVRIE DVPALTVTAL
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
Arabidopsis Description
Ribosomal protein L18e/L15 superfamily protein [Source:TAIR;Acc:AT2G47570]
SUBAcon: [nucleus,cytosol]
SUBAcon: [nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.