Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G018840.4 | Barley | cytosol | 43.54 | 70.33 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 89.12 | 70.05 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 55.78 | 68.91 |
| Bra001156.1-P | Field mustard | nucleus | 84.35 | 66.31 |
| AT3G05590.1 | Thale cress | nucleus | 83.67 | 65.78 |
| AT5G27850.1 | Thale cress | nucleus | 82.99 | 65.24 |
| Bra009940.1-P | Field mustard | cytosol | 82.31 | 64.71 |
| Bra036611.1-P | Field mustard | cytosol | 82.31 | 64.71 |
| OQU92626 | Sorghum | cytosol | 78.91 | 62.03 |
| TraesCS2A01G109900.1 | Wheat | plastid | 78.23 | 61.5 |
| CDY25018 | Canola | cytosol | 82.31 | 61.42 |
| EES17748 | Sorghum | cytosol | 78.23 | 61.17 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 77.55 | 60.96 |
| Os03t0341100-01 | Rice | nucleus | 77.55 | 60.96 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 77.55 | 60.96 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 77.55 | 60.96 |
| Zm00001d022462_P001 | Maize | plastid | 77.55 | 60.96 |
| CDY66803 | Canola | cytosol | 82.31 | 60.5 |
| EER97722 | Sorghum | cytosol | 76.87 | 60.43 |
| Zm00001d009848_P001 | Maize | cytosol | 76.87 | 60.43 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 76.19 | 59.89 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 76.19 | 59.89 |
| Os05t0155100-01 | Rice | nucleus | 76.19 | 59.57 |
| TraesCS1D01G105500.2 | Wheat | golgi | 75.51 | 59.04 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 74.83 | 58.82 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 74.83 | 58.82 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 74.15 | 58.6 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 89.12 | 58.22 |
| CDX74138 | Canola | extracellular | 84.35 | 58.22 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 79.59 | 58.21 |
| CDX99969 | Canola | cytosol, plastid | 82.31 | 57.62 |
| Os07t0674700-01 | Rice | plasma membrane | 76.19 | 57.44 |
| CDY19736 | Canola | cytosol | 82.31 | 56.28 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 50.34 | 55.22 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 84.35 | 54.63 |
| GSMUA_Achr11P... | Banana | cytosol | 49.66 | 54.48 |
| CDY05183 | Canola | mitochondrion | 79.59 | 52.47 |
| CDX80616 | Canola | cytosol | 82.31 | 52.16 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 74.83 | 50.69 |
| CDY18813 | Canola | cytosol, mitochondrion | 84.35 | 49.8 |
| Zm00001d037603_P002 | Maize | cytosol | 76.87 | 49.13 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 81.63 | 48.39 |
| Bra040533.1-P | Field mustard | nucleus | 82.31 | 46.72 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 27.21 | 43.96 |
| CDY46988 | Canola | cytosol | 21.77 | 38.55 |
| CDY27753 | Canola | cytosol, mitochondrion | 30.61 | 38.14 |
| Bra039423.1-P | Field mustard | cytosol | 30.61 | 38.14 |
| CDY36892 | Canola | cytosol | 6.8 | 16.67 |
| CDY05185 | Canola | cytosol | 6.8 | 16.67 |
| VIT_00s0283g00090.t01 | Wine grape | nucleus | 18.37 | 13.43 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 6.12 | 13.24 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | ProteinID:CCB48027 | ProteinID:CCB48027.1 | UniProt:F6H6W6 | EMBL:FN595246 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022625 | InterPro:L18e/L15P_sf | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e |
| InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | TIGR:TC52063 | UniParc:UPI0002109D9E | ArrayExpress:VIT_05s0077g02070 | EnsemblPlantsGene:VIT_05s0077g02070 |
| EnsemblPlants:VIT_05s0077g02070.t01 | unigene:Vvi.8132 | RefSeq:XP_002270635 | RefSeq:XP_002270635.1 | : | : |
Description
No Description!
Coordinates
chr5:-:1597955..1599250
Molecular Weight (calculated)
16608.7 Da
IEP (calculated)
11.117
GRAVY (calculated)
-0.300
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGK SKKTKRTAPK SDDIYLKLLV KLYRFLVRRT GSKFNAVILK RLFMSKINKP PMSLSRLIRY MQGKEDKIAV LVGTVTDDLR VYEVPTLKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTLTNQE NSRPKPL
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTLTNQE NSRPKPL
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.