Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 98.4 | 98.4 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 93.58 | 93.58 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 44.38 | 91.21 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 89.84 | 89.84 |
| GSMUA_Achr11P... | Banana | cytosol | 63.1 | 88.06 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 62.03 | 86.57 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 85.56 | 85.56 |
| PGSC0003DMT400081310 | Potato | nucleus | 83.42 | 83.42 |
| KRH33871 | Soybean | nucleus | 83.42 | 83.42 |
| Bra001156.1-P | Field mustard | nucleus | 83.42 | 83.42 |
| CDY05185 | Canola | cytosol | 26.74 | 83.33 |
| CDY36892 | Canola | cytosol | 26.74 | 83.33 |
| Bra036611.1-P | Field mustard | cytosol | 82.89 | 82.89 |
| Solyc09g075290.2.1 | Tomato | nucleus | 82.89 | 82.89 |
| KRG92914 | Soybean | nucleus | 82.89 | 82.89 |
| AT5G27850.1 | Thale cress | nucleus | 82.89 | 82.89 |
| KRG96455 | Soybean | nucleus | 82.35 | 82.35 |
| KRH68205 | Soybean | nucleus | 81.82 | 81.82 |
| AT3G05590.1 | Thale cress | nucleus | 81.82 | 81.82 |
| Bra009940.1-P | Field mustard | cytosol | 81.82 | 81.82 |
| KRH68491 | Soybean | nucleus | 80.21 | 80.21 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 85.56 | 79.6 |
| PGSC0003DMT400063593 | Potato | cytosol | 79.14 | 79.14 |
| Solyc01g099900.2.1 | Tomato | nucleus | 78.61 | 78.61 |
| CDY25018 | Canola | cytosol | 81.82 | 77.67 |
| CDY66803 | Canola | cytosol | 81.82 | 76.5 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 27.81 | 76.47 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 59.89 | 76.19 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 74.33 | 74.73 |
| CDX99969 | Canola | cytosol, plastid | 82.89 | 73.81 |
| CDX74138 | Canola | extracellular | 83.42 | 73.24 |
| CDY19736 | Canola | cytosol | 82.89 | 72.09 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 86.1 | 71.56 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 83.42 | 68.72 |
| KRG96775 | Soybean | mitochondrion, nucleus | 81.28 | 67.26 |
| CDY05183 | Canola | mitochondrion | 79.68 | 66.82 |
| CDX80616 | Canola | cytosol | 82.35 | 66.38 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 86.1 | 64.92 |
| CDY18813 | Canola | cytosol, mitochondrion | 83.42 | 62.65 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 38.5 | 60.5 |
| Bra040533.1-P | Field mustard | nucleus | 81.82 | 59.07 |
| Solyc09g025200.1.1 | Tomato | extracellular | 20.32 | 52.78 |
| CDY46988 | Canola | cytosol | 17.11 | 38.55 |
| Bra039423.1-P | Field mustard | cytosol | 21.93 | 34.75 |
| CDY27753 | Canola | cytosol, mitochondrion | 21.93 | 34.75 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| ScanProsite:PS01106 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF5 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | InterPro:Ribosomal_L18e_CS |
| SUPFAM:SSF52080 | EnsemblPlantsGene:TraesCS4B01G166800 | EnsemblPlants:TraesCS4B01G166800.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:362146811..362149616
Molecular Weight (calculated)
21084.1 Da
IEP (calculated)
12.032
GRAVY (calculated)
-0.465
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGR NKRTKRTAPK SDDVYLKLLV KLYRFLARRT KSQFNAVILK RLFMSKTNRP PLSLRRLVKF MDGKDNQIAV VVGTITDDKR VYEVPAIKVA
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.