Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra034407.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | Bra034407.1-P | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036611.1-P | Field mustard | cytosol | 98.93 | 98.93 |
| Bra001156.1-P | Field mustard | nucleus | 94.65 | 94.65 |
| AT5G27850.1 | Thale cress | nucleus | 94.12 | 94.12 |
| CDY25018 | Canola | cytosol | 98.4 | 93.4 |
| CDY66803 | Canola | cytosol | 99.47 | 93.0 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 43.32 | 89.01 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 86.63 | 86.63 |
| KRH33871 | Soybean | nucleus | 85.56 | 85.56 |
| PGSC0003DMT400081310 | Potato | nucleus | 85.03 | 85.03 |
| KRH68205 | Soybean | nucleus | 85.03 | 85.03 |
| KRG96455 | Soybean | nucleus | 84.49 | 84.49 |
| KRG92914 | Soybean | nucleus | 84.49 | 84.49 |
| KRH68491 | Soybean | nucleus | 83.42 | 83.42 |
| OQU92626 | Sorghum | cytosol | 83.42 | 83.42 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 82.35 | 82.35 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 82.35 | 82.35 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 82.35 | 82.35 |
| TraesCS2A01G109900.1 | Wheat | plastid | 82.35 | 82.35 |
| EER97722 | Sorghum | cytosol | 82.35 | 82.35 |
| PGSC0003DMT400063593 | Potato | cytosol | 82.35 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 64.71 | 82.31 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 81.82 | 81.82 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 81.82 | 81.82 |
| Zm00001d022462_P001 | Maize | plastid | 81.82 | 81.82 |
| EES17748 | Sorghum | cytosol | 81.82 | 81.38 |
| Zm00001d009848_P001 | Maize | cytosol | 80.75 | 80.75 |
| Os03t0341100-01 | Rice | nucleus | 80.75 | 80.75 |
| Os05t0155100-01 | Rice | nucleus | 80.75 | 80.32 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 57.22 | 79.85 |
| TraesCS1D01G105500.2 | Wheat | golgi | 80.21 | 79.79 |
| CDX80616 | Canola | cytosol | 98.93 | 79.74 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 79.68 | 79.68 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 79.68 | 79.68 |
| GSMUA_Achr11P... | Banana | cytosol | 56.15 | 78.36 |
| Os07t0674700-01 | Rice | plasma membrane | 79.68 | 76.41 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 81.28 | 75.62 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 86.1 | 71.56 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 34.22 | 70.33 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 80.75 | 69.59 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 25.13 | 69.12 |
| KRG96775 | Soybean | mitochondrion, nucleus | 83.42 | 69.03 |
| Bra040533.1-P | Field mustard | nucleus | 93.58 | 67.57 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 42.78 | 67.23 |
| Zm00001d037603_P002 | Maize | cytosol | 80.75 | 65.65 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 81.28 | 61.29 |
| Solyc09g025200.1.1 | Tomato | extracellular | 19.25 | 50.0 |
| Bra039423.1-P | Field mustard | cytosol | 24.6 | 38.98 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | EnsemblPlantsGene:Bra009940 | EnsemblPlants:Bra009940.1 | EnsemblPlants:Bra009940.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L18e/L15P_sf | UniProt:M4D0E2 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 |
| InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI000253F4A1 | : | : |
Description
AT3G05590 (E=7e-097) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Coordinates
chrA06:-:18218755..18219760
Molecular Weight (calculated)
20766.9 Da
IEP (calculated)
11.491
GRAVY (calculated)
-0.326
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRT GSKFDAVILK RLFMSKVNKA PLSLSKLVEF MKGKDGKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALVAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALVAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.