Factsheet for Os07t0674700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G27850.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022462_P001	Maize	plastid	91.28	95.19
EER97722	Sorghum	cytosol	90.77	94.65
Os03t0341100-01	Rice	nucleus	90.77	94.65
TraesCS2D01G110100.1	Wheat	golgi, unclear	87.18	90.91
TraesCS2B01G127900.1	Wheat	cytosol	87.18	90.91
TraesCS2A01G109900.1	Wheat	plastid	87.18	90.91
HORVU2Hr1G018820.1	Barley	cytosol	86.67	90.37
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	42.05	90.11
Os05t0155100-01	Rice	nucleus	86.15	89.36
GSMUA_Achr5P27080_001	Banana	cytosol	58.97	85.82
GSMUA_Achr11P...	Banana	cytosol	57.44	83.58
VIT_14s0060g01930.t01	Wine grape	cytosol	80.0	83.42
CDY05185	Canola	cytosol	25.64	83.33
CDY36892	Canola	cytosol	25.64	83.33
AT5G27850.1	Thale cress	nucleus	78.97	82.35
KRG96455	Soybean	nucleus	78.46	81.82
Bra001156.1-P	Field mustard	nucleus	78.46	81.82
KRH68205	Soybean	nucleus	78.46	81.82
KRH33871	Soybean	nucleus	77.95	81.28
PGSC0003DMT400081310	Potato	nucleus	77.95	81.28
AT3G05590.1	Thale cress	nucleus	77.95	81.28
KRG92914	Soybean	nucleus	77.44	80.75
Solyc09g075290.2.1	Tomato	nucleus	76.92	80.21
KRH68491	Soybean	nucleus	76.92	80.21
GSMUA_Achr2P01730_001	Banana	cytosol	82.56	80.1
Bra036611.1-P	Field mustard	cytosol	76.41	79.68
Bra009940.1-P	Field mustard	cytosol	76.41	79.68
PGSC0003DMT400063593	Potato	cytosol	75.9	79.14
HORVU2Hr1G018840.4	Barley	cytosol	36.92	79.12
Solyc01g099900.2.1	Tomato	nucleus	75.38	78.61
VIT_05s0077g02070.t01	Wine grape	cytosol	57.44	76.19
CDY25018	Canola	cytosol	75.9	75.13
AT2G47570.1	Thale cress	cytosol, nucleus	71.28	74.73
CDY66803	Canola	cytosol	76.41	74.5
VIT_05s0077g02060.t01	Wine grape	mitochondrion	25.64	73.53
CDX74138	Canola	extracellular	78.46	71.83
CDX99969	Canola	cytosol, plastid	76.41	70.95
CDY19736	Canola	cytosol	76.41	69.3
VIT_07s0005g00690.t01	Wine grape	plastid	78.97	68.44
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.95	66.96
KRG96775	Soybean	mitochondrion, nucleus	76.92	66.37
CDY05183	Canola	mitochondrion	74.87	65.47
GSMUA_Achr8P10280_001	Banana	cytosol	82.05	64.52
CDX80616	Canola	cytosol	76.41	64.22
CDY18813	Canola	cytosol, mitochondrion	78.46	61.45
VIT_14s0036g01220.t01	Wine grape	cytosol	35.9	58.82
Bra040533.1-P	Field mustard	nucleus	76.92	57.92
Solyc09g025200.1.1	Tomato	extracellular	18.46	50.0
Bra039423.1-P	Field mustard	cytosol	22.05	36.44
CDY27753	Canola	cytosol, mitochondrion	22.05	36.44
CDY46988	Canola	cytosol	15.38	36.14

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EntrezGene:4344265	EMBL:AK066329	ProteinID:BAC83538.1	ProteinID:BAD31974.1
ProteinID:BAF22531.1	ProteinID:BAT03189.1	ProteinID:EEE67806.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf	EnsemblPlantsGene:Os07g0674700
EnsemblPlants:Os07t0674700-01	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934	PANTHER:PTHR10934:SF3	UniProt:Q6ZDW5
InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI00001BF367	RefSeq:XP_015644690.1

Description

Similar to 60S ribosomal protein L18. (Os07t0674700-01)

Coordinates

chr7:+:28537617..28540104

Molecular Weight (calculated)

21950.2 Da

IEP (calculated)

11.953

GRAVY (calculated)

-0.435

Length

195 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPR SEDVYLKLIV KLYRFLVRRT KSHFNAVILK RLFMSKTNRP PLSMRRLVRF MEGKVPDRHA ISGDQIAVIV GTVTDDKRIY
101: EVPAMKVAAL RFTETARARI INAGGECLTF DQLALRAPLG QNTVLLRGPK NAREAVKHFG PAPGVPHSNT KPYVRSKGRK FEKARGRRNS KGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.