Factsheet for Os05t0155100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G27850.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17748	Sorghum	cytosol	96.81	96.81
Zm00001d009848_P001	Maize	cytosol	95.74	96.26
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	44.68	92.31
TraesCS1A01G096500.2	Wheat	cytosol	90.43	90.91
TraesCS1B01G127200.1	Wheat	cytosol	90.43	90.91
TraesCS1D01G105500.2	Wheat	golgi	90.43	90.43
Os03t0341100-01	Rice	nucleus	89.36	89.84
Os07t0674700-01	Rice	plasma membrane	89.36	86.15
GSMUA_Achr5P27080_001	Banana	cytosol	60.64	85.07
GSMUA_Achr11P...	Banana	cytosol	60.64	85.07
VIT_14s0060g01930.t01	Wine grape	cytosol	83.51	83.96
PGSC0003DMT400081310	Potato	nucleus	82.98	83.42
CDY05185	Canola	cytosol	26.6	83.33
CDY36892	Canola	cytosol	26.6	83.33
Bra001156.1-P	Field mustard	nucleus	81.91	82.35
AT5G27850.1	Thale cress	nucleus	81.91	82.35
Solyc09g075290.2.1	Tomato	nucleus	81.91	82.35
KRG96455	Soybean	nucleus	81.38	81.82
AT3G05590.1	Thale cress	nucleus	81.38	81.82
KRG92914	Soybean	nucleus	81.38	81.82
Bra036611.1-P	Field mustard	cytosol	81.38	81.82
KRH33871	Soybean	nucleus	80.85	81.28
KRH68205	Soybean	nucleus	80.85	81.28
KRH68491	Soybean	nucleus	80.32	80.75
Bra009940.1-P	Field mustard	cytosol	80.32	80.75
GSMUA_Achr2P01730_001	Banana	cytosol	86.17	80.6
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	91.49	79.26
PGSC0003DMT400063593	Potato	cytosol	78.19	78.61
Zm00001d037603_P002	Maize	cytosol	95.74	78.26
Solyc01g099900.2.1	Tomato	nucleus	77.66	78.07
CDY25018	Canola	cytosol	81.38	77.67
VIT_05s0077g02060.t01	Wine grape	mitochondrion	27.66	76.47
VIT_05s0077g02070.t01	Wine grape	cytosol	59.57	76.19
CDY66803	Canola	cytosol	80.32	75.5
AT2G47570.1	Thale cress	cytosol, nucleus	74.47	75.27
CDX99969	Canola	cytosol, plastid	81.38	72.86
CDX74138	Canola	extracellular	81.91	72.3
CDY19736	Canola	cytosol	81.38	71.16
VIT_07s0005g00690.t01	Wine grape	plastid	82.98	69.33
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.91	67.84
KRG96775	Soybean	mitochondrion, nucleus	80.32	66.81
CDY05183	Canola	mitochondrion	78.19	65.92
CDX80616	Canola	cytosol	80.85	65.52
GSMUA_Achr8P10280_001	Banana	cytosol	85.11	64.52
CDY18813	Canola	cytosol, mitochondrion	81.91	61.85
Bra040533.1-P	Field mustard	nucleus	80.32	58.3
VIT_14s0036g01220.t01	Wine grape	cytosol	36.7	57.98
Solyc09g025200.1.1	Tomato	extracellular	18.62	48.61
CDY46988	Canola	cytosol	15.96	36.14
CDY27753	Canola	cytosol, mitochondrion	22.34	35.59
Bra039423.1-P	Field mustard	cytosol	22.34	35.59

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EntrezGene:4337849	ProteinID:AAV32218.1	EMBL:AK061929	EMBL:AK120877
ProteinID:BAF16602.1	ProteinID:BAS92350.1	ProteinID:EEE62383.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf	EnsemblPlantsGene:Os05g0155100
EnsemblPlants:Os05t0155100-01	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934	PANTHER:PTHR10934:SF5	UniProt:Q5WMY3
InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI00000A2ACB	RefSeq:XP_015639202.1

Description

RIBOSOMAL PROTEIN L18Similar to 60S ribosomal protein L18. (Os05t0155100-01)

Coordinates

chr5:+:3230312..3232921

Molecular Weight (calculated)

21312.4 Da

IEP (calculated)

11.957

GRAVY (calculated)

-0.547

Length

188 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPR SDDVYLKLLV KLYRFLVRRT KSNFNAVILK RLFMSKTNRP PLSLRRLAKF MEGKEENNIA VIVGTVTDDK RIQEIPKMKV
101: TALRFTETAR ARIVNAGGEC LTFDQLALRA PLGENTVLLR GPKNAREAVR HFGKAPGVPH SHTKPYVRSK GRKFEKARGR RNSRGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.