Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009940.1-P | Field mustard | cytosol | 93.4 | 98.4 |
| CDY66803 | Canola | cytosol | 95.43 | 94.0 |
| AT5G27850.1 | Thale cress | nucleus | 88.32 | 93.05 |
| CDY36892 | Canola | cytosol | 27.92 | 91.67 |
| CDY05185 | Canola | cytosol | 27.92 | 91.67 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 41.62 | 90.11 |
| CDX99969 | Canola | cytosol, plastid | 93.91 | 88.1 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 82.23 | 86.63 |
| CDY19736 | Canola | cytosol | 93.91 | 86.05 |
| KRH33871 | Soybean | nucleus | 80.2 | 84.49 |
| PGSC0003DMT400081310 | Potato | nucleus | 79.7 | 83.96 |
| KRH68205 | Soybean | nucleus | 79.7 | 83.96 |
| CDX74138 | Canola | extracellular | 90.36 | 83.57 |
| KRG96455 | Soybean | nucleus | 79.19 | 83.42 |
| KRG92914 | Soybean | nucleus | 79.19 | 83.42 |
| OQU92626 | Sorghum | cytosol | 78.68 | 82.89 |
| TraesCS2A01G109900.1 | Wheat | plastid | 78.17 | 82.35 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 78.17 | 82.35 |
| KRH68491 | Soybean | nucleus | 78.17 | 82.35 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 78.17 | 82.35 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 78.17 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 61.42 | 82.31 |
| CDX80616 | Canola | cytosol | 96.45 | 81.9 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 77.67 | 81.82 |
| EER97722 | Sorghum | cytosol | 77.67 | 81.82 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 77.67 | 81.82 |
| EES17748 | Sorghum | cytosol | 77.67 | 81.38 |
| Os05t0155100-01 | Rice | nucleus | 77.67 | 81.38 |
| Zm00001d022462_P001 | Maize | plastid | 77.16 | 81.28 |
| PGSC0003DMT400063593 | Potato | cytosol | 77.16 | 81.28 |
| Zm00001d009848_P001 | Maize | cytosol | 76.65 | 80.75 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 54.82 | 80.6 |
| TraesCS1D01G105500.2 | Wheat | golgi | 76.65 | 80.32 |
| Os03t0341100-01 | Rice | nucleus | 76.14 | 80.21 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 76.14 | 80.21 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 76.14 | 80.21 |
| GSMUA_Achr11P... | Banana | cytosol | 53.81 | 79.1 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 89.85 | 77.97 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 77.67 | 76.12 |
| Os07t0674700-01 | Rice | plasma membrane | 75.13 | 75.9 |
| CDY05183 | Canola | mitochondrion | 85.79 | 75.78 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 82.23 | 72.0 |
| CDY18813 | Canola | cytosol, mitochondrion | 89.34 | 70.68 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 24.37 | 70.59 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 77.67 | 70.51 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 31.98 | 69.23 |
| KRG96775 | Soybean | mitochondrion, nucleus | 78.68 | 68.58 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 40.1 | 66.39 |
| Zm00001d037603_P002 | Maize | cytosol | 76.65 | 65.65 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 78.68 | 62.5 |
| CDY46988 | Canola | cytosol | 19.29 | 45.78 |
| CDY27753 | Canola | cytosol, mitochondrion | 23.35 | 38.98 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:A0A078GKB6 | UniProt:A0A078GKB6 | EnsemblPlants:CDY25018 | ProteinID:CDY25018 |
| ProteinID:CDY25018.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00028841001 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EDCBA2 |
Description
BnaC02g39900DBnaC02g39900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKB6]
Coordinates
chrLK032167:-:324702..326104
Molecular Weight (calculated)
21790.2 Da
IEP (calculated)
11.491
GRAVY (calculated)
-0.283
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLHSTAHA MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRT GSKFDAVILK RLFMSKVNKA PLSLSKLAEF MKGKDGKIAV LVGTITDDLR
101: VHEIPAMKVT ALRFTERARA RIEKAGGECL TFDQLALVAP LGQNTVLLRG PKNSREAVKH FGLAPGVPHS HSKPYVRSKG RKFEKARGKR KSRGFKV
101: VHEIPAMKVT ALRFTERARA RIEKAGGECL TFDQLALVAP LGQNTVLLRG PKNSREAVKH FGLAPGVPHS HSKPYVRSKG RKFEKARGKR KSRGFKV
001: IDLIAGGKSK KTKRTEPKSD DVYLKLLVKA NRYLVRRTES KFNAVILKRL FMSKVNKAPL SLSRLVRYMD GKDGKIAVIV GTVTDDVRIE DVPALTVTAL
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
Arabidopsis Description
Ribosomal protein L18e/L15 superfamily protein [Source:TAIR;Acc:AT2G47570]
SUBAcon: [nucleus,cytosol]
SUBAcon: [nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.