Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 99.47 | 99.47 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 99.47 | 99.47 |
| TraesCS2A01G109900.1 | Wheat | plastid | 98.93 | 98.93 |
| Zm00001d022462_P001 | Maize | plastid | 92.51 | 92.51 |
| EER97722 | Sorghum | cytosol | 91.44 | 91.44 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 44.38 | 91.21 |
| Os07t0674700-01 | Rice | plasma membrane | 90.37 | 86.67 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 61.5 | 85.82 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 41.71 | 85.71 |
| GSMUA_Achr11P... | Banana | cytosol | 60.96 | 85.07 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 85.03 | 85.03 |
| AT5G27850.1 | Thale cress | nucleus | 83.96 | 83.96 |
| Bra001156.1-P | Field mustard | nucleus | 83.96 | 83.96 |
| AT3G05590.1 | Thale cress | nucleus | 83.42 | 83.42 |
| Bra036611.1-P | Field mustard | cytosol | 83.42 | 83.42 |
| Bra009940.1-P | Field mustard | cytosol | 82.35 | 82.35 |
| KRH33871 | Soybean | nucleus | 82.35 | 82.35 |
| KRG96455 | Soybean | nucleus | 82.35 | 82.35 |
| PGSC0003DMT400081310 | Potato | nucleus | 81.82 | 81.82 |
| KRH68205 | Soybean | nucleus | 81.82 | 81.82 |
| KRG92914 | Soybean | nucleus | 81.82 | 81.82 |
| CDY36892 | Canola | cytosol | 26.2 | 81.67 |
| CDY05185 | Canola | cytosol | 26.2 | 81.67 |
| Solyc09g075290.2.1 | Tomato | nucleus | 80.75 | 80.75 |
| KRH68491 | Soybean | nucleus | 80.21 | 80.21 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 85.56 | 79.6 |
| PGSC0003DMT400063593 | Potato | cytosol | 79.14 | 79.14 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 91.44 | 78.8 |
| Solyc01g099900.2.1 | Tomato | nucleus | 78.61 | 78.61 |
| CDY25018 | Canola | cytosol | 82.35 | 78.17 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 60.96 | 77.55 |
| CDY66803 | Canola | cytosol | 82.35 | 77.0 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 27.27 | 75.0 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 74.33 | 74.73 |
| CDX99969 | Canola | cytosol, plastid | 83.42 | 74.29 |
| CDX74138 | Canola | extracellular | 83.96 | 73.71 |
| CDY19736 | Canola | cytosol | 83.42 | 72.56 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 85.56 | 71.11 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 83.96 | 69.16 |
| CDY05183 | Canola | mitochondrion | 80.21 | 67.26 |
| CDX80616 | Canola | cytosol | 82.89 | 66.81 |
| KRG96775 | Soybean | mitochondrion, nucleus | 80.21 | 66.37 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 84.49 | 63.71 |
| CDY18813 | Canola | cytosol, mitochondrion | 83.96 | 63.05 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 38.5 | 60.5 |
| Bra040533.1-P | Field mustard | nucleus | 82.35 | 59.46 |
| Solyc09g025200.1.1 | Tomato | extracellular | 19.79 | 51.39 |
| CDY46988 | Canola | cytosol | 17.11 | 38.55 |
| Bra039423.1-P | Field mustard | cytosol | 22.46 | 35.59 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.46 | 35.59 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G018820 | EnsemblPlants:HORVU2Hr1G018820.1 |
| InterPro:L18e/L15P_sf | UniProt:M0UFA2 | PFAM:PF17135 | ScanProsite:PS01106 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF5 |
| InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | InterPro:Ribosomal_L18e_CS | SUPFAM:SSF52080 | UniParc:UPI00029513A3 | : |
Description
60S ribosomal protein L18 [Source:UniProtKB/TrEMBL;Acc:M0UFA2]
Coordinates
chrchr2H:+:48473942..48476008
Molecular Weight (calculated)
21175.3 Da
IEP (calculated)
12.084
GRAVY (calculated)
-0.450
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGR NKRTKRTAPK SDDVYLKLLV KLYRFLVRRT KSQFNAVILK RLFMSKTNRP PLSMRRLVRF MDGKADKIAV IVGTITDDQR VYEIPAMKVA
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.