Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | Solyc06g065380.2.1 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | Solyc11g018610.1.1 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 37.5 | 29.67 |
| GSMUA_Achr11P... | Banana | cytosol | 48.61 | 26.12 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 47.22 | 25.37 |
| Solyc01g099900.2.1 | Tomato | nucleus | 59.72 | 22.99 |
| Solyc09g075290.2.1 | Tomato | nucleus | 58.33 | 22.46 |
| Zm00001d022462_P001 | Maize | plastid | 52.78 | 20.32 |
| OQU92626 | Sorghum | cytosol | 52.78 | 20.32 |
| EER97722 | Sorghum | cytosol | 52.78 | 20.32 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 52.78 | 20.32 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 52.78 | 20.32 |
| AT5G27850.1 | Thale cress | nucleus | 51.39 | 19.79 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 51.39 | 19.79 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 51.39 | 19.79 |
| TraesCS2A01G109900.1 | Wheat | plastid | 51.39 | 19.79 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 51.39 | 19.79 |
| Zm00001d009848_P001 | Maize | cytosol | 51.39 | 19.79 |
| EES17748 | Sorghum | cytosol | 51.39 | 19.68 |
| Os03t0341100-01 | Rice | nucleus | 50.0 | 19.25 |
| AT3G05590.1 | Thale cress | nucleus | 50.0 | 19.25 |
| Bra036611.1-P | Field mustard | cytosol | 50.0 | 19.25 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 50.0 | 19.25 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 50.0 | 19.25 |
| Bra009940.1-P | Field mustard | cytosol | 50.0 | 19.25 |
| Bra001156.1-P | Field mustard | nucleus | 50.0 | 19.25 |
| TraesCS1D01G105500.2 | Wheat | golgi | 50.0 | 19.15 |
| Os05t0155100-01 | Rice | nucleus | 48.61 | 18.62 |
| Os07t0674700-01 | Rice | plasma membrane | 50.0 | 18.46 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 51.39 | 18.41 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 48.61 | 16.13 |
| Zm00001d037603_P002 | Maize | cytosol | 51.39 | 16.09 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 54.17 | 15.73 |
| Bra040533.1-P | Field mustard | nucleus | 47.22 | 13.13 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 6.94 | 5.49 |
| CDY36892 | Canola | cytosol | 1.39 | 1.67 |
| CDY05185 | Canola | cytosol | 1.39 | 1.67 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | UniProt:K4CSI1 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:Solyc09g025200.1 | EnsemblPlants:Solyc09g025200.1.1 | UniParc:UPI000276C4F9 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr9:-:72389828..72390778
Molecular Weight (calculated)
8365.5 Da
IEP (calculated)
9.044
GRAVY (calculated)
0.118
Length
72 amino acids
Sequence
(BLAST)
(BLAST)
1: MPKERTIRLL SLWVLVTDNV WAYEVPELKV CALRFTMTVR ARIEKAGGEC LTLDQLALRL LLDKTRCRGT CW
001: MSKVNKAPLS LSRLVEFMTG KEDKIAVLVG TITDDLRVHE IPAMKVTALR FTERARARIE KAGGECLTFD QLALRAPLGQ NTVLLRGPKN SREAVKHFGP
101: APGVPHSHSK PYVRAKGRKF EKARGKRKSR GFKV
101: APGVPHSHSK PYVRAKGRKF EKARGKRKSR GFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.