Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | EES09373 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | EES16732 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0341100-01 | Rice | nucleus | 96.26 | 96.26 |
| EER97722 | Sorghum | cytosol | 95.72 | 95.72 |
| EES17748 | Sorghum | cytosol | 94.65 | 94.15 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 44.92 | 92.31 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 63.1 | 88.06 |
| GSMUA_Achr11P... | Banana | cytosol | 62.57 | 87.31 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 87.17 | 87.17 |
| CDY05185 | Canola | cytosol | 27.81 | 86.67 |
| CDY36892 | Canola | cytosol | 27.81 | 86.67 |
| KRG96455 | Soybean | nucleus | 85.56 | 85.56 |
| AT5G27850.1 | Thale cress | nucleus | 85.03 | 85.03 |
| Bra001156.1-P | Field mustard | nucleus | 85.03 | 85.03 |
| KRH68205 | Soybean | nucleus | 85.03 | 85.03 |
| AT3G05590.1 | Thale cress | nucleus | 84.49 | 84.49 |
| KRG92914 | Soybean | nucleus | 84.49 | 84.49 |
| KRH33871 | Soybean | nucleus | 84.49 | 84.49 |
| PGSC0003DMT400081310 | Potato | nucleus | 84.49 | 84.49 |
| KRH68491 | Soybean | nucleus | 83.96 | 83.96 |
| Bra036611.1-P | Field mustard | cytosol | 83.42 | 83.42 |
| Bra009940.1-P | Field mustard | cytosol | 83.42 | 83.42 |
| Solyc09g075290.2.1 | Tomato | nucleus | 83.42 | 83.42 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 88.24 | 82.09 |
| PGSC0003DMT400063593 | Potato | cytosol | 81.28 | 81.28 |
| Solyc01g099900.2.1 | Tomato | nucleus | 80.75 | 80.75 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 62.03 | 78.91 |
| CDY25018 | Canola | cytosol | 82.89 | 78.68 |
| CDY66803 | Canola | cytosol | 83.42 | 78.0 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 76.47 | 76.88 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 27.81 | 76.47 |
| CDX74138 | Canola | extracellular | 85.03 | 74.65 |
| CDX99969 | Canola | cytosol, plastid | 83.42 | 74.29 |
| CDY19736 | Canola | cytosol | 83.42 | 72.56 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 86.1 | 71.56 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 84.49 | 69.6 |
| KRG96775 | Soybean | mitochondrion, nucleus | 83.96 | 69.47 |
| CDY05183 | Canola | mitochondrion | 81.28 | 68.16 |
| CDX80616 | Canola | cytosol | 83.42 | 67.24 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 87.7 | 66.13 |
| CDY18813 | Canola | cytosol, mitochondrion | 85.03 | 63.86 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 39.04 | 61.34 |
| Bra040533.1-P | Field mustard | nucleus | 83.42 | 60.23 |
| Solyc09g025200.1.1 | Tomato | extracellular | 20.32 | 52.78 |
| CDY46988 | Canola | cytosol | 17.11 | 38.55 |
| Bra039423.1-P | Field mustard | cytosol | 22.99 | 36.44 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.99 | 36.44 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | EntrezGene:8083654 | UniProt:A0A1Z5S9X6 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:L18e/L15P_sf | EnsemblPlants:OQU92626 | ProteinID:OQU92626 | ProteinID:OQU92626.1 | PFAM:PF17135 | ScanProsite:PS01106 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF3 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | InterPro:Ribosomal_L18e_CS | EnsemblPlantsGene:SORBI_3001G377800 |
| SUPFAM:SSF52080 | UniParc:UPI0001A82A27 | RefSeq:XP_002465302.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:66585347..66588083
Molecular Weight (calculated)
21043.0 Da
IEP (calculated)
11.904
GRAVY (calculated)
-0.445
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGR NKKTKRTAPK SDDVYLKLLV KLYRFLVRRT KSNFNAVILK RLFMSKTNRP PLSLRRLVNF MEGKENQIAV IVGTVTDDKR VYEVPAMKVA
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.