Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G019530.1 | |
| HORVU5Hr1G032550.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | HORVU4Hr1G019530.1 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | HORVU5Hr1G032550.3 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 57.14 | 43.7 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 70.33 | 43.54 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 85.71 | 41.71 |
| TraesCS2A01G109900.1 | Wheat | plastid | 85.71 | 41.71 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 84.62 | 41.18 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 84.62 | 41.18 |
| CDY46988 | Canola | cytosol | 37.36 | 40.96 |
| Zm00001d022462_P001 | Maize | plastid | 82.42 | 40.11 |
| EER97722 | Sorghum | cytosol | 81.32 | 39.57 |
| Os07t0674700-01 | Rice | plasma membrane | 79.12 | 36.92 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 75.82 | 36.9 |
| Solyc09g075290.2.1 | Tomato | nucleus | 72.53 | 35.29 |
| Bra001156.1-P | Field mustard | nucleus | 71.43 | 34.76 |
| PGSC0003DMT400081310 | Potato | nucleus | 71.43 | 34.76 |
| Bra039423.1-P | Field mustard | cytosol | 45.05 | 34.75 |
| CDY27753 | Canola | cytosol, mitochondrion | 45.05 | 34.75 |
| KRH68205 | Soybean | nucleus | 70.33 | 34.22 |
| KRG96455 | Soybean | nucleus | 70.33 | 34.22 |
| AT3G05590.1 | Thale cress | nucleus | 70.33 | 34.22 |
| AT5G27850.1 | Thale cress | nucleus | 70.33 | 34.22 |
| Bra009940.1-P | Field mustard | cytosol | 70.33 | 34.22 |
| Bra036611.1-P | Field mustard | cytosol | 70.33 | 34.22 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 81.32 | 34.1 |
| KRH33871 | Soybean | nucleus | 69.23 | 33.69 |
| KRG92914 | Soybean | nucleus | 69.23 | 33.69 |
| Solyc01g099900.2.1 | Tomato | nucleus | 68.13 | 33.16 |
| PGSC0003DMT400063593 | Potato | cytosol | 68.13 | 33.16 |
| KRH68491 | Soybean | nucleus | 67.03 | 32.62 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 65.93 | 32.26 |
| CDY66803 | Canola | cytosol | 70.33 | 32.0 |
| CDY25018 | Canola | cytosol | 69.23 | 31.98 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 78.02 | 31.56 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 69.23 | 31.34 |
| CDX74138 | Canola | extracellular | 71.43 | 30.52 |
| CDX99969 | Canola | cytosol, plastid | 70.33 | 30.48 |
| CDY19736 | Canola | cytosol | 70.33 | 29.77 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 71.43 | 28.63 |
| CDX80616 | Canola | cytosol | 70.33 | 27.59 |
| KRG96775 | Soybean | mitochondrion, nucleus | 68.13 | 27.43 |
| CDY05183 | Canola | mitochondrion | 65.93 | 26.91 |
| CDY18813 | Canola | cytosol, mitochondrion | 71.43 | 26.1 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 69.23 | 25.4 |
| Bra040533.1-P | Field mustard | nucleus | 71.43 | 25.1 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 19.78 | 13.43 |
| GSMUA_Achr11P... | Banana | cytosol | 19.78 | 13.43 |
| CDY05185 | Canola | cytosol | 6.59 | 10.0 |
| CDY36892 | Canola | cytosol | 6.59 | 10.0 |
| Solyc09g025200.1.1 | Tomato | extracellular | 5.49 | 6.94 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 4.4 | 5.88 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 4.4 | 4.4 |
Protein Annotations
| Gene3D:3.100.10.10 | MapMan:35.1 | UniProt:A0A287H8T4 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G018840 |
| EnsemblPlants:HORVU2Hr1G018840.4 | InterPro:L18e/L15P_sf | PFAM:PF17135 | ScanProsite:PS01106 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF5 |
| InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | InterPro:Ribosomal_L18e_CS | SUPFAM:SSF52080 | UniParc:UPI000B474C1C | : |
Description
No Description!
Coordinates
chrchr2H:-:48669061..48669666
Molecular Weight (calculated)
10650.3 Da
IEP (calculated)
12.113
GRAVY (calculated)
-0.510
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: QGIDLVAGGR NKRTKRTAPK SDDVYLKLLV KLYRFLVRRT KSQFNAVILK RLFMSKTNRP PLSMRRLVRF MDGKTEGNFP IVVNGQRIKH Y
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.