Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 49.06 | 34.36 |
| VIT_17s0000g08830.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 34.59 | 22.18 |
| VIT_01s0127g00050.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 27.04 | 20.28 |
| GSMUA_AchrUn_... | Banana | extracellular | 5.03 | 11.94 |
| GSMUA_Achr7P14580_001 | Banana | endoplasmic reticulum, extracellular | 4.4 | 10.0 |
Protein Annotations
| EntrezGene:100248984 | wikigene:100248984 | Gene3D:3.20.80.10 | MapMan:35.2 | ProteinID:CBI29254 | ProteinID:CBI29254.3 |
| UniProt:D7TFI1 | EMBL:FN595770 | InterPro:IPR011256 | EntrezGene:LOC100248984 | wikigene:LOC100248984 | PFAM:PF04832 |
| PANTHER:PTHR11220 | PANTHER:PTHR11220:SF33 | InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd | SUPFAM:SSF55136 | TIGR:TC60384 |
| UniParc:UPI0001BE3347 | ArrayExpress:VIT_01s0150g00060 | EnsemblPlantsGene:VIT_01s0150g00060 | EnsemblPlants:VIT_01s0150g00060.t01 | unigene:Vvi.9490 | RefSeq:XP_002269974 |
| RefSeq:XP_002269974.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:22467218..22468319
Molecular Weight (calculated)
18116.5 Da
IEP (calculated)
9.855
GRAVY (calculated)
-0.365
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MWISTPPLNS SSYKDAVGRG FNILFAYIQG NNDQRAKIDM TAPVLVDIFP STGPFCNSSF IMYFYVPTKY QNNPPLSAQA HQVKLPKHKY AAVRRFGGFM
101: DDSNIPTQAL ALRRSLKGTP WETSISTKNR VLTYSVAGYN SPFEYENRVN EVIFWFDRP
101: DDSNIPTQAL ALRRSLKGTP WETSISTKNR VLTYSVAGYN SPFEYENRVN EVIFWFDRP
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.