Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400046783 | Potato | extracellular | 62.5 | 69.51 |
Solyc03g112650.2.1 | Tomato | plastid | 61.29 | 68.47 |
GSMUA_Achr7P14630_001 | Banana | vacuole | 58.47 | 66.82 |
EES02177 | Sorghum | endoplasmic reticulum, extracellular | 53.63 | 60.73 |
Os01t0235300-01 | Rice | extracellular | 51.61 | 59.81 |
TraesCS3A01G158300.1 | Wheat | extracellular, plasma membrane | 51.21 | 59.07 |
TraesCS3D01G166000.1 | Wheat | extracellular, plasma membrane | 51.21 | 59.07 |
HORVU3Hr1G057370.2 | Barley | endoplasmic reticulum, plasma membrane | 51.21 | 58.8 |
KRH03257 | Soybean | endoplasmic reticulum, extracellular | 49.6 | 57.75 |
Zm00001d039273_P001 | Maize | extracellular | 51.21 | 55.95 |
HORVU3Hr1G057380.2 | Barley | mitochondrion, plastid | 51.21 | 52.48 |
VIT_01s0127g00050.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 37.5 | 43.87 |
VIT_01s0150g00060.t01 | Wine grape | cytosol | 22.18 | 34.59 |
VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 31.45 | 34.36 |
Protein Annotations
ArrayExpress:VIT_17s0000g08830 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g08830.t01 | EnsemblPlantsGene:VIT_17s0000g08830 | Gene3D:3.20.80.10 | InterPro:IPR011256 |
InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF36 | PFAM:PF04832 | ProteinID:CBI14992 |
ProteinID:CBI14992.3 | SEG:seg | SUPFAM:SSF55136 | UniParc:UPI0001BE0C67 | UniProt:D7SHN2 | MapMan:35.2 |
Description
No Description!
Coordinates
chr17:-:10241732..10248968
Molecular Weight (calculated)
27866.4 Da
IEP (calculated)
6.773
GRAVY (calculated)
0.015
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MTHVSDIKLI RTDTTLDLSQ KAEKGMLSTA TMFLFYIEFL GCPILCCLAL CKGIESPEFA VIHAESDFEV RLYPESTWMT ASVRDISFEK STWNGFHRLF
101: QYIQGANLNF SRIAMTAPVL TSIVPGAGPL HSSAYFVRFY LPVKFQATPP LPLPELHLKP DKWAIHCIAV RKFSGYARDD NIVKEAEKLA ISLSRSPWAN
201: FTTSESNYAY SIAQYSSPFQ IFGRVNEIWV DVKNSGLEGC ESSSVSTY
101: QYIQGANLNF SRIAMTAPVL TSIVPGAGPL HSSAYFVRFY LPVKFQATPP LPLPELHLKP DKWAIHCIAV RKFSGYARDD NIVKEAEKLA ISLSRSPWAN
201: FTTSESNYAY SIAQYSSPFQ IFGRVNEIWV DVKNSGLEGC ESSSVSTY
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.