Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17100.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P20070_001 | Banana | endoplasmic reticulum, extracellular | 63.0 | 65.3 |
| KRH74808 | Soybean | nucleus | 65.2 | 63.25 |
| Bra026004.1-P | Field mustard | extracellular | 63.88 | 62.77 |
| CDY65124 | Canola | extracellular | 63.88 | 62.77 |
| CDY48464 | Canola | endoplasmic reticulum, vacuole | 63.88 | 62.77 |
| KRH69318 | Soybean | endoplasmic reticulum | 63.88 | 61.97 |
| CDX88448 | Canola | endoplasmic reticulum, extracellular | 61.23 | 61.78 |
| PGSC0003DMT400071037 | Potato | extracellular | 59.47 | 61.09 |
| Os01t0210500-01 | Rice | extracellular | 58.59 | 61.01 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 57.71 | 60.93 |
| Solyc07g061790.2.1 | Tomato | extracellular | 60.79 | 60.26 |
| TraesCS3B01G166900.1 | Wheat | golgi | 58.59 | 60.18 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 58.59 | 60.18 |
| AT1G17100.1 | Thale cress | extracellular | 60.79 | 59.48 |
| Zm00001d039387_P001 | Maize | extracellular | 56.83 | 59.17 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 61.67 | 58.58 |
| EES00077 | Sorghum | extracellular | 56.83 | 58.37 |
| CDY52440 | Canola | endoplasmic reticulum, extracellular | 59.47 | 57.69 |
| Bra035039.1-P | Field mustard | endoplasmic reticulum, extracellular | 59.47 | 57.69 |
| Solyc07g061800.2.1 | Tomato | extracellular | 54.63 | 55.86 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 48.02 | 53.43 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 46.7 | 51.96 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 50.22 | 50.44 |
| VIT_01s0150g00060.t01 | Wine grape | cytosol | 34.36 | 49.06 |
| AT1G78450.1 | Thale cress | extracellular | 46.7 | 47.11 |
| CDY52439 | Canola | extracellular | 44.93 | 46.36 |
| Bra035040.1-P | Field mustard | extracellular | 44.93 | 46.36 |
| AT1G78460.1 | Thale cress | endoplasmic reticulum, extracellular | 42.73 | 44.29 |
| VIT_17s0000g08830.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 34.36 | 31.45 |
| VIT_01s0127g00050.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 27.75 | 29.72 |
Protein Annotations
| EntrezGene:100246364 | wikigene:100246364 | Gene3D:3.20.80.10 | MapMan:35.2 | EMBL:AM474579 | ProteinID:CAN68405 |
| ProteinID:CAN68405.1 | ProteinID:CCB57269 | ProteinID:CCB57269.1 | UniProt:F6HRG1 | EMBL:FN596014 | InterPro:IPR011256 |
| EntrezGene:LOC100246364 | wikigene:LOC100246364 | PFAM:PF04832 | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 | InterPro:Reg_factor_effector_dom_sf |
| InterPro:SOUL_haem-bd | SUPFAM:SSF55136 | SignalP:SignalP-noTM | TIGR:TC51849 | UniParc:UPI00015CE0FD | ArrayExpress:VIT_19s0140g00210 |
| EnsemblPlantsGene:VIT_19s0140g00210 | EnsemblPlants:VIT_19s0140g00210.t01 | unigene:Vvi.7215 | RefSeq:XP_002266519 | RefSeq:XP_002266519.1 | SEG:seg |
Description
No Description!
Coordinates
chr19:-:15779855..15781049
Molecular Weight (calculated)
25271.6 Da
IEP (calculated)
4.290
GRAVY (calculated)
-0.226
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAFHLFKLS LLLSLLPNSI IPNSQKSTGL FPPTCSRIEC PTYDLIQAGN GYEIRRYNST VWISTSPIQD ISLVDATRDS FLQLFDYIQG KNEYQEHIEM
101: TAPVITQVSP SDGPFCESSF VVSFYVPKKN QANPPPAKGL HVQKWGPAYA AVRQFSGFVS DSEVGEEAAA LEASLAGSIW SAAIEKSRPD DPTSTYTVAQ
201: YNSPFEYEER VNEIWMMFDM EDEVGAL
101: TAPVITQVSP SDGPFCESSF VVSFYVPKKN QANPPPAKGL HVQKWGPAYA AVRQFSGFVS DSEVGEEAAA LEASLAGSIW SAAIEKSRPD DPTSTYTVAQ
201: YNSPFEYEER VNEIWMMFDM EDEVGAL
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.