CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035040.1-P	Field mustard	extracellular	100.0	100.0
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	67.27	67.58
CDY65124	Canola	extracellular	49.09	46.75
CDY48464	Canola	endoplasmic reticulum, vacuole	48.64	46.32
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	46.36	44.93
PGSC0003DMT400071037	Potato	extracellular	44.55	44.34
Solyc07g061800.2.1	Tomato	extracellular	44.09	43.69
Solyc07g061790.2.1	Tomato	extracellular	45.0	43.23
CDX88448	Canola	endoplasmic reticulum, extracellular	44.09	43.11
CDY52440	Canola	endoplasmic reticulum, extracellular	45.45	42.73
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	39.55	42.65
KRH69318	Soybean	endoplasmic reticulum	45.0	42.31
KRH74808	Soybean	nucleus	45.0	42.31
KRH13575	Soybean	endoplasmic reticulum, vacuole	45.91	42.26
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	39.09	42.16
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	41.36	41.55
TraesCS3A01G132700.1	Wheat	extracellular	37.73	38.6
TraesCS3D01G149000.1	Wheat	extracellular	38.64	38.46
EES00077	Sorghum	extracellular	38.64	38.46
Os01t0210500-01	Rice	extracellular	37.73	38.07
Zm00001d039387_P001	Maize	extracellular	37.73	38.07
TraesCS3B01G166900.1	Wheat	golgi	37.73	37.56
KRH21801	Soybean	endoplasmic reticulum, vacuole	35.45	34.51

Protein Annotations

EnsemblPlants:CDY52439	EnsemblPlantsGene:GSBRNA2T00006981001	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	ProteinID:CDY52439	ProteinID:CDY52439.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF55136	TMHMM:TMhelix	UniParc:UPI0002541BFD	UniProt:A0A078ISK3	MapMan:35.2

Description

BnaA07g39160DBnaA07g39160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISK3]

Coordinates

chrLK033087:+:25528..26585

Molecular Weight (calculated)

24842.0 Da

IEP (calculated)

8.404

GRAVY (calculated)

-0.248

Length

220 amino acids

Sequence
(BLAST)

001: METGLTILKL SFFLGLVVVV SCSQAPAPWN PSMGMRPGTC DHYECPTYKL VQAGYGYEIR MYNSAVWMST DPITAQSMTQ GTKTGFQRLF RYIQGDNKSK
101: IKMNMTAPVI TQITPGAEMY MYTVSFYIPK KNQQTPPLAD DLHVQSWKPT YVAVRQIGGY VTDDLAIKEA VALMDSLNGT EWKFHIEKSK GKQPDYFVAD
201: YNPPFQTTAR VNEILVPFNM

Best Arabidopsis Sequence Match ( AT1G78460.1 )
(BLAST)

001: METGLNILKL SLCVSLVVVG SYAQAPAPWN PSNGFRPGTC DHYECPTYKL VEAGYGFEIR MYDAALWIST SPIPSLSMTQ ATKTGFRRLN RYIEGDNKSN
101: VKMNMTAPVI AQATPGRSVY TVSLYLPKKN QQNPPQADDL HVRSTKPTYV AVRQIGGYVS NNVAKDEAAA LMESLRDSNW ILPIEKSKGK LPAYFLAVYN
201: PPSHTTARVI NEIMVPFNM

Arabidopsis Description

AT1G78460 protein [Source:UniProtKB/TrEMBL;Acc:Q9SYN5]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.