Factsheet for Solyc07g061800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17100.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g061790.2.1	Tomato	extracellular	71.62	69.43
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	54.05	54.79
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	55.86	54.63
Bra026004.1-P	Field mustard	extracellular	56.31	54.11
CDY48464	Canola	endoplasmic reticulum, vacuole	56.31	54.11
CDY65124	Canola	extracellular	56.31	54.11
TraesCS3A01G132700.1	Wheat	extracellular	52.25	53.95
TraesCS3D01G149000.1	Wheat	extracellular	53.6	53.85
Os01t0210500-01	Rice	extracellular	52.7	53.67
AT1G17100.1	Thale cress	extracellular	55.41	53.02
TraesCS3B01G166900.1	Wheat	golgi	52.7	52.94
KRH74808	Soybean	nucleus	54.95	52.14
EES00077	Sorghum	extracellular	51.8	52.04
Zm00001d039387_P001	Maize	extracellular	50.0	50.92
KRH69318	Soybean	endoplasmic reticulum	53.6	50.85
KRH13575	Soybean	endoplasmic reticulum, vacuole	54.05	50.21
CDX88448	Canola	endoplasmic reticulum, extracellular	49.55	48.89
CDY52440	Canola	endoplasmic reticulum, extracellular	50.0	47.44
Bra035039.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	47.44
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	43.24	47.06
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	42.34	46.08
KRH21801	Soybean	endoplasmic reticulum, vacuole	46.4	45.58
CDY52439	Canola	extracellular	43.69	44.09
Bra035040.1-P	Field mustard	extracellular	43.69	44.09
AT1G78450.1	Thale cress	extracellular	44.14	43.56
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	36.49	36.99
Solyc03g112650.2.1	Tomato	plastid	33.78	33.78

Protein Annotations

EnsemblPlants:Solyc07g061800.2.1	EnsemblPlantsGene:Solyc07g061800.2	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	SignalP:SignalP-noTM	SUPFAM:SSF55136	UniParc:UPI000276B461
UniProt:K4CGL3	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:-:64743825..64744841

Molecular Weight (calculated)

25097.8 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.355

Length

222 amino acids

Sequence
(BLAST)

001: MNSLMIKLLF FLVLISNGYS TKLDSYPPTC KKIECPNYDV IESGKDYEIR RYNSPMWMST EPIDDTSFVS ATRIGFTRLF MYIQGKNDQH EKMDMTAPVM
101: TQVKPSDGPL CSTSFVVSFN VPKKNQPNPP SAEGLHPQKW NQSSYAAVRQ FSGFVTDGDI PKQAAALTAS IADTKWAAAI EKSRSKDNST IYTVAQYNSP
201: FEFRARVNEM WFTFVMDTAI DI

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.