CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 5
endoplasmic reticulum 6
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52440	Canola	endoplasmic reticulum, extracellular	92.89	89.32
CDY65124	Canola	extracellular	70.22	68.4
CDY48464	Canola	endoplasmic reticulum, vacuole	69.33	67.53
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	61.78	61.23
Os01t0210500-01	Rice	extracellular	56.0	57.8
KRH69318	Soybean	endoplasmic reticulum	59.11	56.84
KRH74808	Soybean	nucleus	59.11	56.84
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	55.11	56.62
Zm00001d039387_P001	Maize	extracellular	53.78	55.5
AT1G78450.1	Thale cress	extracellular	55.11	55.11
TraesCS3A01G132700.1	Wheat	extracellular	52.44	54.88
KRH13575	Soybean	endoplasmic reticulum, vacuole	58.22	54.81
EES00077	Sorghum	extracellular	53.33	54.3
TraesCS3D01G149000.1	Wheat	extracellular	53.33	54.3
PGSC0003DMT400071037	Potato	extracellular	52.89	53.85
TraesCS3B01G166900.1	Wheat	golgi	52.0	52.94
Solyc07g061790.2.1	Tomato	extracellular	53.33	52.4
Solyc07g061800.2.1	Tomato	extracellular	48.89	49.55
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	44.89	49.51
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	44.89	49.51
KRH21801	Soybean	endoplasmic reticulum, vacuole	47.56	47.35
CDY52439	Canola	extracellular	43.11	44.09

Protein Annotations

EnsemblPlants:CDX88448	EnsemblPlantsGene:GSBRNA2T00147993001	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	ProteinID:CDX88448	ProteinID:CDX88448.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF55136	UniParc:UPI0004EE9706	MapMan:35.2	:	:

Description

BnaC06g38920D

Coordinates

chrLK031855:-:1075755..1076590

Molecular Weight (calculated)

25003.4 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.328

Length

225 amino acids

Sequence
(BLAST)

001: MEAAALRIFT LSFLLSFLSG NSLAPAQVGK FPPSCNRIEC PSYELVNSGN GYEIRRYNTT VWISTEPIKD ASLVKATRTS FSQLFDYIQG NNDYHQKIEM
101: TAPVIVQVSP SDGPLCESSF TVSFYVPKQN QPDPAPAKNL HVQRWDTRYV AVKQFGGYVS DDTVGEEAAE LETSLKGTVW GKAIDKSREK GGVGSTSAYT
201: VAQYNSPFEF LGRVNEIWLP FQMDK

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.