Factsheet for Solyc07g061790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 7
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22892874
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17100.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071037	Potato	extracellular	87.77	90.95
Solyc07g061800.2.1	Tomato	extracellular	69.43	71.62
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	58.95	61.64
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	60.26	60.79
Os01t0210500-01	Rice	extracellular	55.9	58.72
TraesCS3D01G149000.1	Wheat	extracellular	55.9	57.92
KRH69318	Soybean	endoplasmic reticulum	58.95	57.69
TraesCS3A01G132700.1	Wheat	extracellular	53.71	57.21
TraesCS3B01G166900.1	Wheat	golgi	55.02	57.01
KRH74808	Soybean	nucleus	58.08	56.84
EES00077	Sorghum	extracellular	54.59	56.56
Zm00001d039387_P001	Maize	extracellular	53.71	56.42
CDY65124	Canola	extracellular	55.9	55.41
CDY48464	Canola	endoplasmic reticulum, vacuole	55.9	55.41
Bra026004.1-P	Field mustard	extracellular	55.9	55.41
AT1G17100.1	Thale cress	extracellular	55.46	54.74
KRH13575	Soybean	endoplasmic reticulum, vacuole	55.9	53.56
CDX88448	Canola	endoplasmic reticulum, extracellular	52.4	53.33
CDY52440	Canola	endoplasmic reticulum, extracellular	51.97	50.85
Bra035039.1-P	Field mustard	endoplasmic reticulum, extracellular	51.97	50.85
KRH21801	Soybean	endoplasmic reticulum, vacuole	48.47	49.12
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	43.67	49.02
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	43.67	49.02
CDY52439	Canola	extracellular	43.23	45.0
Bra035040.1-P	Field mustard	extracellular	43.23	45.0
AT1G78450.1	Thale cress	extracellular	41.05	41.78
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	38.43	40.18
Solyc03g112650.2.1	Tomato	plastid	31.0	31.98

Protein Annotations

EnsemblPlants:Solyc07g061790.2.1	EnsemblPlantsGene:Solyc07g061790.2	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF55136
UniParc:UPI000276B460	UniProt:K4CGL2	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:-:64740667..64741752

Molecular Weight (calculated)

25851.0 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.127

Length

229 amino acids

Sequence
(BLAST)

001: MLSVSMNLLM MRLCLFLFLV SKLCNGYSTK LNFYPPTCQR IECPNYDLIE SGKDYEIRRY DSPMWMSTAP IDDISYVSAT RTGFLRLFDY IQGKNKYHET
101: VKMTAPVIIQ VKPSDGPFCA SSFVVSFYVP KKNQPNPPPA KGLHLQKWGD TYVAVRQFSG FIADDDLPRE AAALSASIAG TNWAAAIDKS HAADNTTLYT
201: VAGYNSPFEF KNRVNEIWFT FDLEKALAI

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.