Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17100.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT1G17100.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69318 | Soybean | endoplasmic reticulum | 91.45 | 91.45 |
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 63.25 | 65.2 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 66.24 | 64.85 |
| PGSC0003DMT400071037 | Potato | extracellular | 57.27 | 60.63 |
| GSMUA_Achr2P20070_001 | Banana | endoplasmic reticulum, extracellular | 56.41 | 60.27 |
| Zm00001d039387_P001 | Maize | extracellular | 55.98 | 60.09 |
| Os01t0210500-01 | Rice | extracellular | 55.98 | 60.09 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 55.13 | 60.0 |
| CDY65124 | Canola | extracellular | 58.97 | 59.74 |
| Bra026004.1-P | Field mustard | extracellular | 58.97 | 59.74 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 56.41 | 59.73 |
| CDY48464 | Canola | endoplasmic reticulum, vacuole | 58.55 | 59.31 |
| TraesCS3B01G166900.1 | Wheat | golgi | 55.98 | 59.28 |
| CDX88448 | Canola | endoplasmic reticulum, extracellular | 56.84 | 59.11 |
| EES00077 | Sorghum | extracellular | 55.56 | 58.82 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 50.85 | 58.33 |
| Solyc07g061790.2.1 | Tomato | extracellular | 56.84 | 58.08 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 50.0 | 57.35 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 55.13 | 57.08 |
| AT1G17100.1 | Thale cress | extracellular | 56.41 | 56.9 |
| CDY52440 | Canola | endoplasmic reticulum, extracellular | 56.41 | 56.41 |
| Bra035039.1-P | Field mustard | endoplasmic reticulum, extracellular | 56.41 | 56.41 |
| Solyc07g061800.2.1 | Tomato | extracellular | 52.14 | 54.95 |
| AT1G78450.1 | Thale cress | extracellular | 46.15 | 48.0 |
| CDY52439 | Canola | extracellular | 42.31 | 45.0 |
| Bra035040.1-P | Field mustard | extracellular | 42.31 | 45.0 |
| AT1G78460.1 | Thale cress | endoplasmic reticulum, extracellular | 38.89 | 41.55 |
| KRH03257 | Soybean | endoplasmic reticulum, extracellular | 29.49 | 32.39 |
| KRG99406 | Soybean | extracellular | 26.5 | 23.66 |
Protein Annotations
| EMBL:ACUP02000072 | EMBL:BT096512 | EnsemblPlants:KRH74808 | EnsemblPlantsGene:GLYMA_01G044000 | EntrezGene:100809242 | Gene3D:3.20.80.10 |
| InterPro:IPR011256 | InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 | PFAM:PF04832 |
| ProteinID:KRH74808 | ProteinID:KRH74808.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF55136 | UniParc:UPI0001B16832 |
| UniProt:C6TFW8 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:4828066..4829670
Molecular Weight (calculated)
25932.9 Da
IEP (calculated)
7.379
GRAVY (calculated)
-0.102
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATIITCKL SLLLSLLSVS LLLGVSSSDT LQNVGAIPPT CKRIECPSYD VIHFGNGYEI RRYNSPVWIS NSPILDISLV EATRTGFRRL FDYIQGKNNY
101: KQKIEMTAPV ISEVLPSDGP FCESSFVVSF YVPKENQANP PPAKGLHVQR WKTVFAAVRQ FGGFVKDSSV GEEAAALKAS IAGTKWADAV EKSQKRAGHA
201: SVYTVAQYNA PFEYDNRVNE IWFLFDIENE PQTV
101: KQKIEMTAPV ISEVLPSDGP FCESSFVVSF YVPKENQANP PPAKGLHVQR WKTVFAAVRQ FGGFVKDSSV GEEAAALKAS IAGTKWADAV EKSQKRAGHA
201: SVYTVAQYNA PFEYDNRVNE IWFLFDIENE PQTV
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.