Factsheet for Os01t0210500-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 19038476
extracellular: 23159799
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17100.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G149000.1	Wheat	extracellular	88.53	87.33
TraesCS3A01G132700.1	Wheat	extracellular	84.4	85.58
TraesCS3B01G166900.1	Wheat	golgi	86.7	85.52
EES00077	Sorghum	extracellular	83.94	82.81
Zm00001d039387_P001	Maize	extracellular	82.11	82.11
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	65.6	65.3
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	61.01	58.59
PGSC0003DMT400071037	Potato	extracellular	58.72	57.92
CDX88448	Canola	endoplasmic reticulum, extracellular	57.8	56.0
KRH74808	Soybean	nucleus	60.09	55.98
Solyc07g061790.2.1	Tomato	extracellular	58.72	55.9
AT1G17100.1	Thale cress	extracellular	59.17	55.6
KRH69318	Soybean	endoplasmic reticulum	59.17	55.13
CDY65124	Canola	extracellular	57.8	54.55
Bra026004.1-P	Field mustard	extracellular	57.8	54.55
CDY48464	Canola	endoplasmic reticulum, vacuole	57.34	54.11
Bra035039.1-P	Field mustard	endoplasmic reticulum, extracellular	56.88	52.99
CDY52440	Canola	endoplasmic reticulum, extracellular	56.88	52.99
Solyc07g061800.2.1	Tomato	extracellular	53.67	52.7
KRH13575	Soybean	endoplasmic reticulum, vacuole	55.5	50.63
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	46.33	49.51
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	45.41	48.53
KRH21801	Soybean	endoplasmic reticulum, vacuole	45.87	44.25
AT1G78450.1	Thale cress	extracellular	43.58	42.22
Os01t0235300-01	Rice	extracellular	38.99	39.72
CDY52439	Canola	extracellular	38.07	37.73
Bra035040.1-P	Field mustard	extracellular	38.07	37.73
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	36.24	36.07

Protein Annotations

Gene3D:3.20.80.10	MapMan:35.2	EntrezGene:4325558	EMBL:AK068329	EMBL:AK071702	EMBL:AK104322
ProteinID:BAA96146.1	ProteinID:BAA96188.1	ProteinID:BAF04282.1	ProteinID:BAS70983.1	ProteinID:EAZ11000.1	InterPro:IPR011256
EnsemblPlantsGene:Os01g0210500	EnsemblPlants:Os01t0210500-01	PFAM:PF04832	PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	UniProt:Q9LD82
InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd	SUPFAM:SSF55136	SignalP:SignalP-noTM	UniParc:UPI00000A01C6	RefSeq:XP_015614111.1
SEG:seg	:	:	:	:	:

Description

Similar to SOUL-like protein. (Os01t0210500-01)

Coordinates

chr1:-:6007921..6009027

Molecular Weight (calculated)

23597.7 Da

IEP (calculated)

4.485

GRAVY (calculated)

-0.037

Length

218 amino acids

Sequence
(BLAST)

001: MARRSGLMLL LLAAAAVASA AVPPSCERIE CPSYEVVDSA NGFEIRRYSD AMWASTAPIE DISFVAATRT GFLQLFNYIQ GKNAYNETIE MTAPVLTQVA
101: PSDGPFCVSS FVVSFYVPAK NQPDPPPAEG LHVQRWAGAR YAAVRRFGGF VADSDVGEQA ALLDASLQGT RWAAAVSDGR RADPTSSYTV AQYNSPFEFS
201: GRVNEIWMLF DAKDASDM

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.