Factsheet for TraesCS3B01G166900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 4
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G149000.1	Wheat	extracellular	97.74	97.74
TraesCS3A01G132700.1	Wheat	extracellular	94.12	96.74
Os01t0210500-01	Rice	extracellular	85.52	86.7
Zm00001d039387_P001	Maize	extracellular	80.54	81.65
EES00077	Sorghum	extracellular	81.45	81.45
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	62.9	63.47
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	60.18	58.59
PGSC0003DMT400071037	Potato	extracellular	56.11	56.11
KRH74808	Soybean	nucleus	59.28	55.98
Solyc07g061790.2.1	Tomato	extracellular	57.01	55.02
AT1G17100.1	Thale cress	extracellular	57.47	54.74
KRH69318	Soybean	endoplasmic reticulum	57.92	54.7
CDY65124	Canola	extracellular	56.56	54.11
Bra026004.1-P	Field mustard	extracellular	56.56	54.11
CDY48464	Canola	endoplasmic reticulum, vacuole	56.11	53.68
Solyc07g061800.2.1	Tomato	extracellular	52.94	52.7
CDX88448	Canola	endoplasmic reticulum, extracellular	52.94	52.0
KRH13575	Soybean	endoplasmic reticulum, vacuole	55.66	51.46
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	45.7	49.51
CDY52440	Canola	endoplasmic reticulum, extracellular	52.04	49.15
Bra035039.1-P	Field mustard	endoplasmic reticulum, extracellular	52.04	49.15
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	45.25	49.02
KRH21801	Soybean	endoplasmic reticulum, vacuole	46.15	45.13
AT1G78450.1	Thale cress	extracellular	42.99	42.22
CDY52439	Canola	extracellular	37.56	37.73
Bra035040.1-P	Field mustard	extracellular	37.56	37.73
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	33.48	33.79

Protein Annotations

EnsemblPlants:TraesCS3B01G166900.1	EnsemblPlantsGene:TraesCS3B01G166900	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF55136
TMHMM:TMhelix	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:166714941..166715756

Molecular Weight (calculated)

23819.3 Da

IEP (calculated)

4.842

GRAVY (calculated)

0.041

Length

221 amino acids

Sequence
(BLAST)

001: MARRSSMLLL LAAAALLAVG AGAAVPPSCE RIECPAYDVV DNANGFEIRR YKDAMWVSTA PIEDISLVDA TRSGFLQLFK YIQGKNAYNE TIEMTAPVLT
101: RVAPSDGPFC VSSFVVSFYV PAKNQADAPP AEGLHVQKWA GARYAAVRRF GGFVADADVG KQAALLDASL QGTRWAAAVS DGRKADPASE YTVAQYNSPF
201: EFSGRVNEIW MLFDTMAASD M

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.