Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17100.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65124 | Canola | extracellular | 100.0 | 100.0 |
| CDY48464 | Canola | endoplasmic reticulum, vacuole | 98.7 | 98.7 |
| AT1G17100.1 | Thale cress | extracellular | 83.55 | 83.19 |
| Bra035039.1-P | Field mustard | endoplasmic reticulum, extracellular | 67.97 | 67.09 |
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 62.77 | 63.88 |
| PGSC0003DMT400071037 | Potato | extracellular | 56.71 | 59.28 |
| KRH69318 | Soybean | endoplasmic reticulum | 59.74 | 58.97 |
| KRH74808 | Soybean | nucleus | 59.74 | 58.97 |
| Os01t0210500-01 | Rice | extracellular | 54.55 | 57.8 |
| Zm00001d039387_P001 | Maize | extracellular | 54.55 | 57.8 |
| GSMUA_Achr2P20070_001 | Banana | endoplasmic reticulum, extracellular | 54.55 | 57.53 |
| EES00077 | Sorghum | extracellular | 54.98 | 57.47 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 53.25 | 57.21 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 54.55 | 57.01 |
| TraesCS3B01G166900.1 | Wheat | golgi | 54.11 | 56.56 |
| Solyc07g061800.2.1 | Tomato | extracellular | 54.11 | 56.31 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 58.01 | 56.07 |
| Solyc07g061790.2.1 | Tomato | extracellular | 55.41 | 55.9 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 48.92 | 50.0 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 43.72 | 49.51 |
| Bra035040.1-P | Field mustard | extracellular | 46.75 | 49.09 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 42.86 | 48.53 |
Protein Annotations
| Gene3D:3.20.80.10 | MapMan:35.2 | EnsemblPlantsGene:Bra026004 | EnsemblPlants:Bra026004.1 | EnsemblPlants:Bra026004.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0016020 | GO:GO:0020037 | InterPro:IPR011256 | UniProt:M4EB45 | PFAM:PF04832 |
| PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 | InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd | SUPFAM:SSF55136 | SignalP:SignalP-noTM |
| UniParc:UPI000253F289 | SEG:seg | : | : | : | : |
Description
AT1G17100 (E=5e-098) | SOUL heme-binding family protein
Coordinates
chrA06:+:6568011..6568816
Molecular Weight (calculated)
25549.0 Da
IEP (calculated)
4.432
GRAVY (calculated)
-0.221
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MELAGLSFLK LSFLLSLLSG GSDLLNPISE PGLVGKFPPT CNRIECPNYE VVHAGNGYEI RRYDTTVWIS TEPIQDISLK DATRTAFFQL FAYIQGKNEY
101: HQKIEMTAPV ISQVSPSDGP LCESSFTVSF YVPKKNQPDP APAENLHIQK WTPRYVAVRQ FSGFVSDYNV GEEAAALSAS LEGTAWANAI EKSKEDGGVG
201: ADSAYTVAQY NSPFEFIGRV NEIWLPFQMD D
101: HQKIEMTAPV ISQVSPSDGP LCESSFTVSF YVPKKNQPDP APAENLHIQK WTPRYVAVRQ FSGFVSDYNV GEEAAALSAS LEGTAWANAI EKSKEDGGVG
201: ADSAYTVAQY NSPFEFIGRV NEIWLPFQMD D
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.