Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17100.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT1G17100.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT1G17100.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0210500-01 | Rice | extracellular | 65.3 | 65.6 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 62.56 | 63.72 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 63.93 | 63.35 |
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 65.3 | 63.0 |
| TraesCS3B01G166900.1 | Wheat | golgi | 63.47 | 62.9 |
| EES00077 | Sorghum | extracellular | 62.56 | 61.99 |
| Zm00001d039387_P001 | Maize | extracellular | 61.64 | 61.93 |
| PGSC0003DMT400071037 | Potato | extracellular | 60.73 | 60.18 |
| Solyc07g061790.2.1 | Tomato | extracellular | 61.64 | 58.95 |
| KRH74808 | Soybean | nucleus | 60.27 | 56.41 |
| KRH69318 | Soybean | endoplasmic reticulum | 60.27 | 56.41 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 60.27 | 55.23 |
| CDX88448 | Canola | endoplasmic reticulum, extracellular | 56.62 | 55.11 |
| AT1G17100.1 | Thale cress | extracellular | 57.99 | 54.74 |
| CDY65124 | Canola | extracellular | 57.53 | 54.55 |
| Bra026004.1-P | Field mustard | extracellular | 57.53 | 54.55 |
| CDY48464 | Canola | endoplasmic reticulum, vacuole | 57.08 | 54.11 |
| Solyc07g061800.2.1 | Tomato | extracellular | 54.79 | 54.05 |
| CDY52440 | Canola | endoplasmic reticulum, extracellular | 56.16 | 52.56 |
| Bra035039.1-P | Field mustard | endoplasmic reticulum, extracellular | 56.16 | 52.56 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 44.75 | 48.04 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 44.75 | 48.04 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 49.32 | 47.79 |
| GSMUA_AchrUn_... | Banana | extracellular | 13.7 | 44.78 |
| GSMUA_Achr7P14580_001 | Banana | endoplasmic reticulum, extracellular | 14.16 | 44.29 |
| AT1G78450.1 | Thale cress | extracellular | 42.92 | 41.78 |
| GSMUA_Achr7P14630_001 | Banana | vacuole | 41.1 | 41.47 |
| Bra035040.1-P | Field mustard | extracellular | 41.55 | 41.36 |
| CDY52439 | Canola | extracellular | 41.55 | 41.36 |
| AT1G78460.1 | Thale cress | endoplasmic reticulum, extracellular | 39.73 | 39.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P20070_001 | EnsemblPlants:GSMUA_Achr2T20070_001 | EnsemblPlantsGene:GSMUA_Achr2G20070_001 | Gene3D:3.20.80.10 | InterPro:IPR011256 | InterPro:Reg_factor_effector_dom_sf |
| InterPro:SOUL_haem-bd | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 | PFAM:PF04832 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF55136 | UniParc:UPI00029578D8 | UniProt:M0S9J8 | MapMan:35.2 | : | : |
Description
Putative Heme-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G20070_001]
Coordinates
chr2:+:19984436..19985500
Molecular Weight (calculated)
24047.5 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.072
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPTHFILP VLLLAAHLLG SRAVPPTCER IECPSYDVVD KGNGFEIRLY NSTQWMSTSS IDDISFVNAT RTGFLRLFDY IQGKNKYGEK IEMTAPVITQ
101: VAPSDGPFCA SSFVVSFFVP KKNQPNPPPA DGLQLQTWGL KYAAVRQFGG FISDGDSVGE EAAALYSSLQ GSIWFSAVSK GQTADPTSAY TVAQYNSPFE
201: FSGRVNEIWM MFAMDSHRI
101: VAPSDGPFCA SSFVVSFFVP KKNQPNPPPA DGLQLQTWGL KYAAVRQFGG FISDGDSVGE EAAALYSSLQ GSIWFSAVSK GQTADPTSAY TVAQYNSPFE
201: FSGRVNEIWM MFAMDSHRI
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.