Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035040.1-P | Field mustard | extracellular | 67.58 | 67.27 |
| CDY52439 | Canola | extracellular | 67.58 | 67.27 |
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 44.29 | 42.73 |
| GSMUA_Achr2P20070_001 | Banana | endoplasmic reticulum, extracellular | 39.73 | 39.73 |
| KRH69318 | Soybean | endoplasmic reticulum | 41.55 | 38.89 |
| KRH74808 | Soybean | nucleus | 41.55 | 38.89 |
| Solyc07g061790.2.1 | Tomato | extracellular | 40.18 | 38.43 |
| PGSC0003DMT400071037 | Potato | extracellular | 37.9 | 37.56 |
| AT1G17100.1 | Thale cress | extracellular | 39.73 | 37.5 |
| Solyc07g061800.2.1 | Tomato | extracellular | 36.99 | 36.49 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 33.79 | 36.27 |
| Os01t0210500-01 | Rice | extracellular | 36.07 | 36.24 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 33.33 | 35.78 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 38.81 | 35.56 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 34.25 | 34.88 |
| Zm00001d039387_P001 | Maize | extracellular | 34.7 | 34.86 |
| EES00077 | Sorghum | extracellular | 35.16 | 34.84 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 34.25 | 33.94 |
| TraesCS3B01G166900.1 | Wheat | golgi | 33.79 | 33.48 |
| AT1G78450.1 | Thale cress | extracellular | 32.42 | 31.56 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 30.59 | 29.65 |
Protein Annotations
| Gene3D:3.20.80.10 | MapMan:35.2 | EntrezGene:844182 | UniProt:A0A178WHL1 | ProteinID:AAD30589.1 | ProteinID:AAF71793.1 |
| ProteinID:AEE36108.1 | EMBL:AK317161 | ArrayExpress:AT1G78460 | EnsemblPlantsGene:AT1G78460 | RefSeq:AT1G78460 | TAIR:AT1G78460 |
| RefSeq:AT1G78460-TAIR-G | EnsemblPlants:AT1G78460.1 | TAIR:AT1G78460.1 | GO:GO:0008150 | InterPro:IPR011256 | RefSeq:NP_177967.1 |
| ProteinID:OAP16963.1 | PFAM:PF04832 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 | UniProt:Q9SYN5 | InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd |
| SUPFAM:SSF55136 | SignalP:SignalP-noTM | UniParc:UPI00000A7990 | SEG:seg | : | : |
Description
AT1G78460 protein [Source:UniProtKB/TrEMBL;Acc:Q9SYN5]
Coordinates
chr1:-:29518184..29519323
Molecular Weight (calculated)
24251.2 Da
IEP (calculated)
9.402
GRAVY (calculated)
-0.243
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: METGLNILKL SLCVSLVVVG SYAQAPAPWN PSNGFRPGTC DHYECPTYKL VEAGYGFEIR MYDAALWIST SPIPSLSMTQ ATKTGFRRLN RYIEGDNKSN
101: VKMNMTAPVI AQATPGRSVY TVSLYLPKKN QQNPPQADDL HVRSTKPTYV AVRQIGGYVS NNVAKDEAAA LMESLRDSNW ILPIEKSKGK LPAYFLAVYN
201: PPSHTTARVI NEIMVPFNM
101: VKMNMTAPVI AQATPGRSVY TVSLYLPKKN QQNPPQADDL HVRSTKPTYV AVRQIGGYVS NNVAKDEAAA LMESLRDSNW ILPIEKSKGK LPAYFLAVYN
201: PPSHTTARVI NEIMVPFNM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.