Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014297_P006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G17100.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00077 | Sorghum | extracellular | 92.66 | 91.4 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 81.65 | 82.79 |
| Os01t0210500-01 | Rice | extracellular | 82.11 | 82.11 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 82.57 | 81.45 |
| TraesCS3B01G166900.1 | Wheat | golgi | 81.65 | 80.54 |
| GSMUA_Achr2P20070_001 | Banana | endoplasmic reticulum, extracellular | 61.93 | 61.64 |
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 59.17 | 56.83 |
| KRH74808 | Soybean | nucleus | 60.09 | 55.98 |
| KRH69318 | Soybean | endoplasmic reticulum | 60.09 | 55.98 |
| PGSC0003DMT400071037 | Potato | extracellular | 55.5 | 54.75 |
| CDY65124 | Canola | extracellular | 57.8 | 54.55 |
| Bra026004.1-P | Field mustard | extracellular | 57.8 | 54.55 |
| CDY48464 | Canola | endoplasmic reticulum, vacuole | 57.34 | 54.11 |
| CDX88448 | Canola | endoplasmic reticulum, extracellular | 55.5 | 53.78 |
| Solyc07g061790.2.1 | Tomato | extracellular | 56.42 | 53.71 |
| AT1G17100.1 | Thale cress | extracellular | 56.88 | 53.45 |
| CDY52440 | Canola | endoplasmic reticulum, extracellular | 54.59 | 50.85 |
| Bra035039.1-P | Field mustard | endoplasmic reticulum, extracellular | 54.59 | 50.85 |
| Solyc07g061800.2.1 | Tomato | extracellular | 50.92 | 50.0 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 54.59 | 49.79 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 44.95 | 48.04 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 44.04 | 47.06 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 48.62 | 46.9 |
| AT1G78450.1 | Thale cress | extracellular | 44.5 | 43.11 |
| CDY52439 | Canola | extracellular | 38.07 | 37.73 |
| Bra035040.1-P | Field mustard | extracellular | 38.07 | 37.73 |
| Zm00001d039273_P001 | Maize | extracellular | 38.07 | 36.56 |
| AT1G78460.1 | Thale cress | endoplasmic reticulum, extracellular | 34.86 | 34.7 |
Protein Annotations
| EnsemblPlants:Zm00001d039387_P001 | EnsemblPlants:Zm00001d039387_T001 | EnsemblPlantsGene:Zm00001d039387 | Gene3D:3.20.80.10 | InterPro:IPR011256 | InterPro:Reg_factor_effector_dom_sf |
| InterPro:SOUL_haem-bd | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 | PFAM:PF04832 | ProteinID:ONM28542.1 | ProteinID:ONM28543.1 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF55136 | TMHMM:TMhelix | UniParc:UPI0001BA9409 | UniProt:A0A096RG04 |
| MapMan:35.2 | : | : | : | : | : |
Description
csu32aSOUL heme-binding family protein
Coordinates
chr3:+:3142741..3145531
Molecular Weight (calculated)
23646.8 Da
IEP (calculated)
4.434
GRAVY (calculated)
-0.014
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRASLLLA AALLVAVAAA AVPPTCERIE CPAYEVVDSA NGFEIRRYTD AMWITTAPIE DISFVAATRT GFLQLFDYIQ GKNAYNQTIE MTAPVLTRVS
101: PSDGPFCASA FAVSFYVPAK NQADPPPAEG LRVDRWAGAR YAAVRRFGGF VADADVGEQA ARLEASLQGT RWAAAVNDAR RADPASPYTV AQYNSPFEFT
201: GRVNEIWMLF DADDDASM
101: PSDGPFCASA FAVSFYVPAK NQADPPPAEG LRVDRWAGAR YAAVRRFGGF VADADVGEQA ARLEASLQGT RWAAAVNDAR RADPASPYTV AQYNSPFEFT
201: GRVNEIWMLF DADDDASM
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.