CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 5
endoplasmic reticulum 6
vacuole 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17100.1	KRH14106	AT5G35750.1	18642946
AT1G17100.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74808	Soybean	nucleus	91.45	91.45
KRH13575	Soybean	endoplasmic reticulum, vacuole	67.95	66.53
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	61.97	63.88
PGSC0003DMT400071037	Potato	extracellular	57.27	60.63
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	56.41	60.27
Zm00001d039387_P001	Maize	extracellular	55.98	60.09
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	52.14	59.8
CDY65124	Canola	extracellular	58.97	59.74
Bra026004.1-P	Field mustard	extracellular	58.97	59.74
TraesCS3A01G132700.1	Wheat	extracellular	54.7	59.53
CDY48464	Canola	endoplasmic reticulum, vacuole	58.55	59.31
Os01t0210500-01	Rice	extracellular	55.13	59.17
CDX88448	Canola	endoplasmic reticulum, extracellular	56.84	59.11
Solyc07g061790.2.1	Tomato	extracellular	57.69	58.95
TraesCS3D01G149000.1	Wheat	extracellular	55.56	58.82
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	51.28	58.82
KRH21801	Soybean	endoplasmic reticulum, vacuole	56.41	58.41
EES00077	Sorghum	extracellular	55.13	58.37
TraesCS3B01G166900.1	Wheat	golgi	54.7	57.92
AT1G17100.1	Thale cress	extracellular	55.98	56.47
CDY52440	Canola	endoplasmic reticulum, extracellular	56.41	56.41
Bra035039.1-P	Field mustard	endoplasmic reticulum, extracellular	56.41	56.41
Solyc07g061800.2.1	Tomato	extracellular	50.85	53.6
AT1G78450.1	Thale cress	extracellular	45.73	47.56
CDY52439	Canola	extracellular	42.31	45.0
Bra035040.1-P	Field mustard	extracellular	42.31	45.0
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	38.89	41.55
KRH03257	Soybean	endoplasmic reticulum, extracellular	30.34	33.33
KRG99406	Soybean	extracellular	26.92	24.05

Protein Annotations

EMBL:ACUP02000701	EnsemblPlants:KRH69318	EnsemblPlantsGene:GLYMA_02G019600	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf
InterPro:SOUL_haem-bd	PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	ProteinID:KRH69318	ProteinID:KRH69318.1
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF55136	UniParc:UPI0001D842FF	UniProt:I1JBN4	MapMan:35.2

Description

hypothetical protein

Coordinates

chr2:+:1764147..1765917

Molecular Weight (calculated)

26018.1 Da

IEP (calculated)

7.917

GRAVY (calculated)

-0.110

Length

234 amino acids

Sequence
(BLAST)

001: MAATIITTCK LSLLLSLLSV SLLLGVRSDT LQNVGAIPPT CKRIECPSYD VIHVGNGYEI RRYNSPVWIS NSPIQDISLV EATRTGFRRL FDYIQGKNNY
101: KQKIEMTAPV ISEVLPSDGP FCESSFVVSF YVPKENQANP PPAKGLQVQR WKTVFVAVRQ FGGFVKDSSV GEEAAALKAS IAGTKWADAV EKSQKRAGHA
201: SVYTVAQYNA PFEYDNRVNE IWFLFDIENE LQTV

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.