CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 6
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17100.1	CDX74635	AT5G35750.1	18642946
AT1G17100.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026004.1-P	Field mustard	extracellular	100.0	100.0
CDY48464	Canola	endoplasmic reticulum, vacuole	98.7	98.7
AT1G17100.1	Thale cress	extracellular	83.55	83.19
CDX88448	Canola	endoplasmic reticulum, extracellular	68.4	70.22
CDY52440	Canola	endoplasmic reticulum, extracellular	67.97	67.09
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	62.77	63.88
PGSC0003DMT400071037	Potato	extracellular	56.71	59.28
KRH74808	Soybean	nucleus	59.74	58.97
KRH69318	Soybean	endoplasmic reticulum	59.74	58.97
Zm00001d039387_P001	Maize	extracellular	54.55	57.8
Os01t0210500-01	Rice	extracellular	54.55	57.8
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	54.55	57.53
EES00077	Sorghum	extracellular	54.98	57.47
TraesCS3A01G132700.1	Wheat	extracellular	53.25	57.21
TraesCS3D01G149000.1	Wheat	extracellular	54.55	57.01
TraesCS3B01G166900.1	Wheat	golgi	54.11	56.56
Solyc07g061800.2.1	Tomato	extracellular	54.11	56.31
KRH13575	Soybean	endoplasmic reticulum, vacuole	58.01	56.07
Solyc07g061790.2.1	Tomato	extracellular	55.41	55.9
KRH21801	Soybean	endoplasmic reticulum, vacuole	48.92	50.0
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	43.72	49.51
CDY52439	Canola	extracellular	46.75	49.09
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	42.86	48.53

Protein Annotations

EnsemblPlants:CDY65124	EnsemblPlantsGene:GSBRNA2T00044206001	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	ProteinID:CDY65124	ProteinID:CDY65124.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF55136	UniParc:UPI000253F289	UniProt:A0A078JEK3	MapMan:35.2	:

Description

BnaA06g38400DBnaA06g38400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEK3]

Coordinates

chrLK034664:+:8638..9659

Molecular Weight (calculated)

25549.0 Da

IEP (calculated)

4.432

GRAVY (calculated)

-0.221

Length

231 amino acids

Sequence
(BLAST)

001: MELAGLSFLK LSFLLSLLSG GSDLLNPISE PGLVGKFPPT CNRIECPNYE VVHAGNGYEI RRYDTTVWIS TEPIQDISLK DATRTAFFQL FAYIQGKNEY
101: HQKIEMTAPV ISQVSPSDGP LCESSFTVSF YVPKKNQPDP APAENLHIQK WTPRYVAVRQ FSGFVSDYNV GEEAAALSAS LEGTAWANAI EKSKEDGGVG
201: ADSAYTVAQY NSPFEFIGRV NEIWLPFQMD D

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.