Factsheet for PGSC0003DMT400071037

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 4
endoplasmic reticulum 5
vacuole 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17100.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g061790.2.1	Tomato	extracellular	90.95	87.77
GSMUA_Achr2P20070_001	Banana	endoplasmic reticulum, extracellular	60.18	60.73
VIT_19s0140g00210.t01	Wine grape	endoplasmic reticulum, vacuole	61.09	59.47
Os01t0210500-01	Rice	extracellular	57.92	58.72
KRH74808	Soybean	nucleus	60.63	57.27
KRH69318	Soybean	endoplasmic reticulum	60.63	57.27
TraesCS3A01G132700.1	Wheat	extracellular	55.66	57.21
TraesCS3D01G149000.1	Wheat	extracellular	57.01	57.01
Bra026004.1-P	Field mustard	extracellular	59.28	56.71
CDY48464	Canola	endoplasmic reticulum, vacuole	59.28	56.71
CDY65124	Canola	extracellular	59.28	56.71
TraesCS3B01G166900.1	Wheat	golgi	56.11	56.11
AT1G17100.1	Thale cress	extracellular	58.82	56.03
EES00077	Sorghum	extracellular	55.66	55.66
Zm00001d039387_P001	Maize	extracellular	54.75	55.5
KRH13575	Soybean	endoplasmic reticulum, vacuole	58.82	54.39
CDX88448	Canola	endoplasmic reticulum, extracellular	53.85	52.89
CDY52440	Canola	endoplasmic reticulum, extracellular	53.85	50.85
Bra035039.1-P	Field mustard	endoplasmic reticulum, extracellular	53.85	50.85
KRH21801	Soybean	endoplasmic reticulum, vacuole	51.13	50.0
KRH55053	Soybean	endoplasmic reticulum, extracellular, plasma membrane	45.25	49.02
KRH55052	Soybean	endoplasmic reticulum, plasma membrane	44.8	48.53
CDY52439	Canola	extracellular	44.34	44.55
Bra035040.1-P	Field mustard	extracellular	44.34	44.55
AT1G78450.1	Thale cress	extracellular	44.8	44.0
AT1G78460.1	Thale cress	endoplasmic reticulum, extracellular	37.56	37.9
PGSC0003DMT400046783	Potato	extracellular	32.58	32.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400071037	EnsemblPlantsGene:PGSC0003DMG400027630	Gene3D:3.20.80.10	InterPro:IPR011256	InterPro:Reg_factor_effector_dom_sf	InterPro:SOUL_haem-bd
PANTHER:PTHR11220	PANTHER:PTHR11220:SF25	PFAM:PF04832	PGSC:PGSC0003DMG400027630	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF55136	UniParc:UPI00029672DA	UniProt:M1CN40	MapMan:35.2	:	:

Description

Heme-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027630]

Coordinates

chr7:-:52001233..52007739

Molecular Weight (calculated)

24928.6 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.202

Length

221 amino acids

Sequence
(BLAST)

001: MNSLMIKVCF FLVLISNGYS TKLDSYPPTC QRIECPNYDV IESGKDYEIR RYNSPMWMST EPIDDISFVS ATRTGFLRLF DYIQGKNNYH ETVKMTAPVI
101: IQVKPSDGPF CVSSFVVSFY VPKKNQPNPP PAEGLHLQKW GKTYVAVRQF SGFITDDDLP REAAALSASI AGTKWAAAID KSHAADNTTL YTVAGYNSPF
201: EFKNRVNEIW FTFDLDKALA I

Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)

001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV

Arabidopsis Description

HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.