Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G17100.1 | Thale cress | extracellular | 59.11 | 57.33 |
| CDX88448 | Canola | endoplasmic reticulum, extracellular | 55.11 | 55.11 |
| Bra035039.1-P | Field mustard | endoplasmic reticulum, extracellular | 54.67 | 52.56 |
| CDY52440 | Canola | endoplasmic reticulum, extracellular | 54.67 | 52.56 |
| VIT_19s0140g00210.t01 | Wine grape | endoplasmic reticulum, vacuole | 47.11 | 46.7 |
| KRH74808 | Soybean | nucleus | 48.0 | 46.15 |
| KRH69318 | Soybean | endoplasmic reticulum | 47.56 | 45.73 |
| PGSC0003DMT400071037 | Potato | extracellular | 44.0 | 44.8 |
| KRH13575 | Soybean | endoplasmic reticulum, vacuole | 47.56 | 44.77 |
| Zm00001d039387_P001 | Maize | extracellular | 43.11 | 44.5 |
| TraesCS3D01G149000.1 | Wheat | extracellular | 43.56 | 44.34 |
| TraesCS3A01G132700.1 | Wheat | extracellular | 42.22 | 44.19 |
| Solyc07g061800.2.1 | Tomato | extracellular | 43.56 | 44.14 |
| EES00077 | Sorghum | extracellular | 43.11 | 43.89 |
| KRH55053 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 39.56 | 43.63 |
| Os01t0210500-01 | Rice | extracellular | 42.22 | 43.58 |
| KRH55052 | Soybean | endoplasmic reticulum, plasma membrane | 39.11 | 43.14 |
| TraesCS3B01G166900.1 | Wheat | golgi | 42.22 | 42.99 |
| GSMUA_Achr2P20070_001 | Banana | endoplasmic reticulum, extracellular | 41.78 | 42.92 |
| Solyc07g061790.2.1 | Tomato | extracellular | 41.78 | 41.05 |
| KRH21801 | Soybean | endoplasmic reticulum, vacuole | 40.44 | 40.27 |
| AT1G78460.1 | Thale cress | endoplasmic reticulum, extracellular | 31.56 | 32.42 |
Protein Annotations
| Gene3D:3.20.80.10 | MapMan:35.2 | EntrezGene:844181 | ProteinID:AAD30590.1 | ProteinID:AAF71794.1 | ProteinID:AEE36107.1 |
| ArrayExpress:AT1G78450 | EnsemblPlantsGene:AT1G78450 | RefSeq:AT1G78450 | TAIR:AT1G78450 | RefSeq:AT1G78450-TAIR-G | EnsemblPlants:AT1G78450.1 |
| TAIR:AT1G78450.1 | GO:GO:0008150 | InterPro:IPR011256 | RefSeq:NP_565181.1 | PFAM:PF04832 | PO:PO:0000013 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR11220 | PANTHER:PTHR11220:SF25 |
| UniProt:Q9SYN6 | InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd | SUPFAM:SSF55136 | SignalP:SignalP-noTM | UniParc:UPI000009D901 |
| SEG:seg | : | : | : | : | : |
Description
F3F9.4 [Source:UniProtKB/TrEMBL;Acc:Q9SYN6]
Coordinates
chr1:-:29516989..29518028
Molecular Weight (calculated)
25339.7 Da
IEP (calculated)
4.729
GRAVY (calculated)
-0.291
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAALSIFKL SFLLTLLSGG SDLIDSLPPN CNRAECPSYE VVHAGNGYEI HRYNTTVWIS TEPIQDISLN EASGNGWNQL SDYMNGNNDY HQRIEIALPY
101: ITQVSQNLST FIVSFFVPKA FQPDPPPGNN LHVQRWDSRY VAVKQISGYV ADHKIGKQVA ELKASLQGTV WAKAIEKSRE TGGVGSAWAY TVAQFSWPFQ
201: WSQRVNEIWF PFEMEDEETV SIVTQ
101: ITQVSQNLST FIVSFFVPKA FQPDPPPGNN LHVQRWDSRY VAVKQISGYV ADHKIGKQVA ELKASLQGTV WAKAIEKSRE TGGVGSAWAY TVAQFSWPFQ
201: WSQRVNEIWF PFEMEDEETV SIVTQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.