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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400046783 Potato extracellular 92.79 92.38
GSMUA_Achr7P14630_001 Banana vacuole 68.02 69.59
KRH03257 Soybean endoplasmic reticulum, extracellular 60.81 63.38
TraesCS3A01G158300.1 Wheat extracellular, plasma membrane 60.36 62.33
Os01t0235300-01 Rice extracellular 59.91 62.15
HORVU3Hr1G057370.2 Barley endoplasmic reticulum, plasma membrane 60.36 62.04
TraesCS3D01G166000.1 Wheat extracellular, plasma membrane 59.91 61.86
VIT_17s0000g08830.t01 Wine grape cytosol, peroxisome, plasma membrane 68.47 61.29
EES02177 Sorghum endoplasmic reticulum, extracellular 59.46 60.27
HORVU3Hr1G057380.2 Barley mitochondrion, plastid 60.36 55.37
Zm00001d039273_P001 Maize extracellular 56.31 55.07
Solyc07g061800.2.1 Tomato extracellular 33.78 33.78
Solyc07g061790.2.1 Tomato extracellular 31.98 31.0
Protein Annotations
EnsemblPlants:Solyc03g112650.2.1EnsemblPlantsGene:Solyc03g112650.2Gene3D:3.20.80.10InterPro:IPR011256InterPro:Reg_factor_effector_dom_sfInterPro:SOUL_haem-bd
PANTHER:PTHR11220PANTHER:PTHR11220:SF36PFAM:PF04832PFscan:PS51257SEG:segSignalP:SignalP-noTM
SUPFAM:SSF55136UniParc:UPI000276768FUniProt:K4BKB8MapMan:35.2::
Description
No Description!
Coordinates
chr3:+:63023048..63025730
Molecular Weight (calculated)
24975.7 Da
IEP (calculated)
8.445
GRAVY (calculated)
-0.164
Length
222 amino acids
Sequence
(BLAST)
001: MEKSRLKNGL IIVFAITIAC SAEFSKAIES PEYRIVHSES DFEIRHYRES VWMVAPVNEI SFEKATRNGF HRLFQFIQGA NLNFSRIYMT KPVLTSIVPG
101: AGPLHSSAYF VKFYLPDKFQ ADPPLPLPEL NLQPDPWTSH CIAVRKFSGF ARDSNIVKEA EKLALSLSRS PWANSTASTS EYAYSIAQYN SPFRIIGRVN
201: EVWVDVTGSR ANGCESNPIA AY
Best Arabidopsis Sequence Match ( AT1G17100.1 )
(BLAST)
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.