Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G158300.1 | Wheat | extracellular, plasma membrane | 95.37 | 95.81 |
| TraesCS3D01G166000.1 | Wheat | extracellular, plasma membrane | 94.44 | 94.88 |
| HORVU3Hr1G057380.2 | Barley | mitochondrion, plastid | 100.0 | 89.26 |
| Os01t0235300-01 | Rice | extracellular | 84.26 | 85.05 |
| EES02177 | Sorghum | endoplasmic reticulum, extracellular | 79.17 | 78.08 |
| Zm00001d039273_P001 | Maize | extracellular | 76.85 | 73.13 |
| GSMUA_Achr7P14630_001 | Banana | vacuole | 66.67 | 66.36 |
| PGSC0003DMT400046783 | Potato | extracellular | 62.5 | 60.54 |
| Solyc03g112650.2.1 | Tomato | plastid | 62.04 | 60.36 |
| KRH03257 | Soybean | endoplasmic reticulum, extracellular | 54.63 | 55.4 |
| VIT_17s0000g08830.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 58.8 | 51.21 |
| VIT_01s0127g00050.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 39.35 | 40.09 |
| KRG99406 | Soybean | extracellular | 37.96 | 31.3 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G057370.2 | EnsemblPlantsGene:HORVU3Hr1G057370 | Gene3D:3.20.80.10 | InterPro:IPR011256 | InterPro:Reg_factor_effector_dom_sf | InterPro:SOUL_haem-bd |
| PANTHER:PTHR11220 | PANTHER:PTHR11220:SF36 | PFAM:PF04832 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF55136 |
| UniParc:UPI000B46EF36 | UniProt:A0A287L5T6 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:430590413..430592533
Molecular Weight (calculated)
24068.6 Da
IEP (calculated)
7.782
GRAVY (calculated)
-0.152
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: TMERQHPAAP LLPVLLLLAL LSPAARGSES PQYATVHVES DFEVRHYRDT VWMSAPSDDI SFHVATKLGF HRLFQYLMGA NLNSSRIRMT TPILTSIVPG
101: AGPLHSSAYF VRLYLPVEFQ ASPPVPLPEL NLHPDRWPGH CVAVRSFSGY ARDHNVVEEA EKLAVSLSRS PWGNSTNHPS KSAYSIAQYN SPFRIIGRVN
201: EVWFNVDCRS AGVEAY
101: AGPLHSSAYF VRLYLPVEFQ ASPPVPLPEL NLHPDRWPGH CVAVRSFSGY ARDHNVVEEA EKLAVSLSRS PWGNSTNHPS KSAYSIAQYN SPFRIIGRVN
201: EVWFNVDCRS AGVEAY
001: MATGLGFFKL SFLLSLLSGG SDLLGPDAES GVAQIGKFPP SCNRIECPSY ELVHSGNGYE IRRYNNTVWV STEPIPDISL VDATRTAFFQ LFAYIQGKNE
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
101: YHQKIEMTAP VISQVSPSDG PFCESSFTVS FYVPKKNQPD PAPSENLHIQ KWNSRYVAVR QFSGFVSDDS IGEQAAALDS SLKGTAWANA IAKSKEDGGV
201: GSDSAYTVAQ YNSPFEFSGR VNEIWLPFEL DV
Arabidopsis Description
HBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W6J0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.