Factsheet for VIT_04s0008g03840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
endoplasmic reticulum 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g03530.t01	Wine grape	cytosol	64.54	66.09
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	52.77	56.07
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	51.6	55.82
Solyc08g066770.2.1	Tomato	cytosol	56.64	55.52
PGSC0003DMT400011023	Potato	cytosol	57.14	55.11
VIT_09s0002g03920.t01	Wine grape	cytosol	38.32	39.86
VIT_09s0002g03910.t01	Wine grape	plasma membrane	40.0	33.01
VIT_08s0040g02760.t01	Wine grape	cytosol	24.71	27.17
VIT_01s0011g05700.t01	Wine grape	cytosol	22.69	25.38
VIT_12s0059g00110.t01	Wine grape	cytosol	16.3	25.06
VIT_05s0094g01320.t01	Wine grape	cytosol	24.54	25.0
VIT_13s0067g03880.t01	Wine grape	cytosol	24.71	24.96
VIT_06s0004g03980.t01	Wine grape	cytosol, nucleus, plasma membrane	22.52	24.72
VIT_12s0059g00150.t01	Wine grape	cytosol	15.97	24.55
VIT_14s0081g00350.t01	Wine grape	cytosol	21.34	23.78
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	24.87	23.2
VIT_12s0059g00130.t01	Wine grape	cytosol	14.79	23.1
VIT_12s0028g03960.t01	Wine grape	plasma membrane	16.13	23.08
VIT_05s0020g04750.t01	Wine grape	cytosol, peroxisome, plasma membrane	18.99	21.98
VIT_05s0165g00270.t01	Wine grape	cytosol, mitochondrion, plasma membrane	19.16	21.8
VIT_12s0059g00090.t01	Wine grape	cytosol	13.11	21.73
VIT_12s0028g04020.t01	Wine grape	plasma membrane	11.6	21.7
VIT_05s0165g00140.t01	Wine grape	cytosol	16.64	21.24
VIT_14s0081g00390.t01	Wine grape	cytosol	17.98	20.86
VIT_14s0081g00360.t01	Wine grape	cytosol	14.45	20.48
VIT_12s0059g00160.t01	Wine grape	cytosol, peroxisome, plasma membrane	20.0	20.45
VIT_05s0124g00670.t01	Wine grape	cytosol	19.83	20.38
VIT_19s0014g05330.t01	Wine grape	extracellular	19.66	20.21
VIT_05s0102g00030.t01	Wine grape	cytosol	19.5	19.66
VIT_05s0165g00160.t01	Wine grape	cytosol, peroxisome, plasma membrane	20.84	19.59
VIT_05s0165g00010.t01	Wine grape	nucleus	15.13	19.52
VIT_12s0059g00050.t01	Wine grape	plasma membrane	21.01	19.32
VIT_14s0081g00420.t01	Wine grape	cytosol	18.99	18.99
VIT_05s0165g00290.t01	Wine grape	cytosol	19.16	18.97
VIT_05s0102g00050.t01	Wine grape	nucleus	19.16	18.97
VIT_05s0124g00720.t01	Wine grape	cytosol	12.1	18.95
VIT_12s0059g00060.t01	Wine grape	cytosol	16.3	18.87
VIT_12s0028g03920.t01	Wine grape	cytosol, peroxisome, plasma membrane	21.01	18.77
VIT_05s0102g00060.t01	Wine grape	cytosol, nucleus, plasma membrane	18.32	18.57
VIT_12s0028g03950.t01	Wine grape	cytosol, extracellular, plasma membrane	20.17	17.99
VIT_13s0047g01220.t01	Wine grape	plasma membrane	18.66	17.9
VIT_05s0165g00060.t01	Wine grape	cytosol	7.56	17.72
VIT_05s0029g01540.t01	Wine grape	plasma membrane	19.66	17.54
VIT_05s0029g01490.t01	Wine grape	cytosol	13.95	17.44
VIT_05s0029g01420.t01	Wine grape	cytosol	19.16	17.38
VIT_14s0081g00400.t01	Wine grape	cytosol, peroxisome, plasma membrane	20.34	17.31
VIT_12s0028g04030.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	19.66	17.28
VIT_12s0028g03990.t01	Wine grape	cytosol	15.97	16.02
VIT_12s0028g04000.t01	Wine grape	cytosol, plasma membrane	21.51	15.55
VIT_05s0029g01430.t01	Wine grape	cytosol, nucleus, plasma membrane	18.15	14.06
VIT_12s0059g00080.t01	Wine grape	cytosol, nucleus, plasma membrane	20.84	14.0
VIT_12s0028g04010.t01	Wine grape	cytosol	10.42	13.84
VIT_05s0124g00460.t01	Wine grape	cytosol	6.05	13.33
VIT_14s0081g00370.t01	Wine grape	cytosol	7.39	12.9
VIT_12s0059g00120.t01	Wine grape	cytosol	16.3	11.76

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100245624	wikigene:100245624	MapMan:35.1	EMBL:AM463501	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN61518	ProteinID:CAN61518.1	ProteinID:CCB46721	ProteinID:CCB46721.1
UniProt:F6H2Y6	EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100245624	wikigene:LOC100245624	InterPro:MFS_trans_sf
PFAM:PF12796	PFAM:PF13857	PFAM:PF13962	InterPro:PGG_dom	PRINTS:PR01415	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR24177	PANTHER:PTHR24177:SF117	SMART:SM00248	SUPFAM:SSF103473	SUPFAM:SSF48403
TIGR:TC56407	TMHMM:TMhelix	UniParc:UPI00015C8A72	ArrayExpress:VIT_04s0008g03840	EnsemblPlantsGene:VIT_04s0008g03840	EnsemblPlants:VIT_04s0008g03840.t01
RefSeq:XP_002281561	RefSeq:XP_002281561.1	RefSeq:XP_019075008.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:3182895..3185997

Molecular Weight (calculated)

65564.0 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.029

Length

595 amino acids

Sequence
(BLAST)

001: MDERLHEAVL KGDVSAFLVL VQEDEDILKQ VVPRSSSTIL HLAARLGHPE LAAEILKLSP ELAAARNEKL DTPLHEACRE GRAEIVKLLL ETDPLIAGKV
101: NRDNETALYV GCDRGRLDVV KQLLNHPWLL ALELDGFTTS LHLAASRGHT DIVKEILKVR PDFAREKDLD GCIPLHLACS KGHLEVTSEL LRLDPDLTSL
201: QDKDGLTPLH WAIIKGHLNI IDKILAIGLH LAQTTTKHGE TVLHLGVKNN RYEAVQYLME KLNFTQLLNT PDKNGNTILH LAAAGKLTTM VKYLLELGVD
301: VNAQNCKGFT SLDVITSDAS NSKAGLEIVT ALCQAGAKRC SQLSPASPEI QENHQPTSGV LNSLNVASPW PKVMPDSPVQ HHNKKHDQSR KKLLDQNEGL
401: RNARNKFTVV AVLVATVTFS AGINPPGGFN QDTGKSMLGK QTPFKVFMVC NILALFLSLS IVIVLVSVIP YRRTSMMRLL VFTHKVMWVS MIFMAAAYMA
501: ATWMIIPPGP GSRWEFAVLL CLGGGCTMAI FLITGMVLVR QFRKYQLRKV NAKTYGGPDN IISHAGEMQM IKRHGYESTC NSDVDSSDQG GYHLY

Best Arabidopsis Sequence Match ( AT1G10340.1 )
(BLAST)

001: MQPIFHAILK NDLPAFLELV EDSESSLEER NEEEHLNNTV LHMAAKFGHR ELVSKIIELR PSLVSSRNAY RNTPLHLAAI LGDVNIVMQM LETGLEVCSA
101: RNINNHTPLH LACRSNSIEA ARLIAEKTQS IGLGELILAI SSGSTSIVGT ILERFPDLAR EEAWVVEDGS QSTLLHHACD KGDFELTTIL LGLDQGLEEA
201: LNPNGLSPLH LAVLRGSVVI LEEFLDKVPL SFSSITPSKE TVFHLAARNK NMDAFVFMAE SLGINSQILL QQTDESGNTV LHIAASVSFD APLIRYIVGK
301: NIVDITSKNK MGFEAFQLLP REAQDFELLS RWLRFGTETS QELDSENNVE QHEGSQEVEV IRLLRIIGIN TSEIAERKRS KEQEVERGRQ NLEYQMHIEA
401: LQNARNTIAI VAVLIASVAY AGGINPPGGV YQDGPWRGKS LVGKTTAFKV FAICNNIALF TSLGIVILLV SIIPYKRKPL KRLLVATHRM MWVSVGFMAT
501: AYIAASWVTI PHYHGTQWLF PAIVAVAGGA LTVLFFYLGV ETIGHWFKKM NRVGDNIPSF ARTSSDLAVS GKSGYFTY

Arabidopsis Description

Ankyrin repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9SY76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.