Factsheet for VIT_10s0003g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071511	Potato	nucleus	75.07	79.26
Solyc03g005990.2.1	Tomato	nucleus	75.07	79.26
Solyc02g071990.2.1	Tomato	nucleus	74.19	78.09
PGSC0003DMT400073250	Potato	nucleus	74.49	77.91
CDX98592	Canola	nucleus	61.29	75.72
CDY01563	Canola	nucleus	61.29	75.72
Bra012570.1-P	Field mustard	nucleus	60.7	75.0
Bra013359.1-P	Field mustard	nucleus	60.7	75.0
CDX78903	Canola	nucleus	60.7	75.0
AT4G18890.1	Thale cress	nucleus	61.88	74.3
CDX99414	Canola	nucleus	60.41	66.88
VIT_04s0023g01250.t01	Wine grape	nucleus	47.21	50.95
VIT_18s0001g12020.t01	Wine grape	nucleus	43.11	47.88
VIT_19s0014g00880.t01	Wine grape	cytosol	21.41	42.69
VIT_02s0087g00430.t01	Wine grape	nucleus	12.32	29.79
VIT_10s0003g04710.t01	Wine grape	plastid	16.72	26.51

Protein Annotations

EntrezGene:100263555	wikigene:100263555	MapMan:11.3.2.4	MapMan:15.5.39	InterPro:BES1_N	InterPro:BZR
ProteinID:CCB55713	ProteinID:CCB55713.1	UniProt:F6HMC5	EMBL:FN595992	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009742	GO:GO:0009987	EntrezGene:LOC100263555
wikigene:LOC100263555	PFAM:PF05687	PANTHER:PTHR31506	PANTHER:PTHR31506:SF10	UniParc:UPI00015CB9AB	ArrayExpress:VIT_10s0003g01790
EnsemblPlantsGene:VIT_10s0003g01790	EnsemblPlants:VIT_10s0003g01790.t01	RefSeq:XP_002267082	RefSeq:XP_002267082.1	RefSeq:XP_019078200.1	SEG:seg

Description

No Description!

Coordinates

chr10:+:3247881..3251709

Molecular Weight (calculated)

36298.1 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.611

Length

341 amino acids

Sequence
(BLAST)

001: MTGTRLPTWK ERENNKRRER RRRAIAAKIY SGLRMYGNYK LPKHCDNNEV LKALCNEAGW TVEEDGTTYR KGCKPVERMD IMGGSASASP CSSYQPSPCA
101: SYNPSPCASY NPSPCASYNP SPASSSFPSP VSSRYAANAN ASADANALIP WLKNLSSGSS STSSKFPHHL YIHGGSISAP VTPPLSSPTA RTPRLKNDWD
201: DTTGGPGWAG QRYFLPSSTP PSPGRQVHPD SGWFAGMQIP QGGPASPTFS LVSANPFGFK EEVLAGGGSR MWTPGQSGTC SPAVAAGSDH TADVPMADGI
301: AAEFAFGSNT TGLVKPWEGE RIHEECGSDE LELTLGSSRT R

Best Arabidopsis Sequence Match ( AT1G78700.1 )
(BLAST)

001: MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG WIVEPDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP
101: CASYNPSPGS SNFMSPASSS FANLTSGDGQ SLIPWLKHLS TTSSSSASSS SRLPNYLYIP GGSISAPVTP PLSSPTARTP RMNTDWQQLN NSFFVSSTPP
201: SPTRQIIPDS EWFSGIQLAQ SVPASPTFSL VSQNPFGFKE EAASAAGGGG GSRMWTPGQS GTCSPAIPPG ADQTADVPMS EAVAPPEFAF GSNTNGLVKA
301: WEGERIHEES GSDDLELTLG NSSTR

Arabidopsis Description

BEH4BES1/BZR1 homolog protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.