Factsheet for VIT_04s0023g01250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28616	Soybean	nucleus	74.37	75.81
KRH76864	Soybean	nucleus	73.1	75.0
PGSC0003DMT400011470	Potato	nucleus	75.32	74.61
Solyc02g063010.2.1	Tomato	nucleus	75.0	74.29
GSMUA_Achr7P26010_001	Banana	nucleus	67.09	73.61
CDX75598	Canola	nucleus	70.25	73.27
Bra011706.1-P	Field mustard	nucleus	70.25	73.27
CDX69246	Canola	nucleus	69.94	72.94
CDX72603	Canola	nucleus	68.99	71.48
GSMUA_Achr2P06600_001	Banana	nucleus	60.13	70.9
GSMUA_Achr8P31150_001	Banana	nucleus	65.19	69.83
GSMUA_Achr3P29980_001	Banana	nucleus	65.82	69.57
CDY62653	Canola	nucleus	67.41	68.93
Os07t0580500-01	Rice	nucleus	64.87	68.79
Bra017782.1-P	Field mustard	nucleus	67.41	68.05
AT3G50750.1	Thale cress	nucleus	58.54	67.03
AT4G36780.1	Thale cress	nucleus	54.75	65.28
VIT_18s0001g12020.t01	Wine grape	nucleus	63.29	65.15
CDY64371	Canola	nucleus	58.54	64.91
CDX90690	Canola	nucleus	58.54	64.91
Bra012891.1-P	Field mustard	nucleus	58.54	64.91
TraesCS2A01G187800.1	Wheat	nucleus	64.24	64.86
TraesCS2B01G219300.1	Wheat	nucleus	63.92	64.54
TraesCS2D01G199900.1	Wheat	nucleus	63.92	64.54
Zm00001d021927_P001	Maize	nucleus	62.97	62.78
Zm00001d006677_P001	Maize	nucleus	63.29	61.73
EER99604	Sorghum	nucleus, plastid	65.51	61.61
HORVU0Hr1G040070.2	Barley	cytosol, mitochondrion	47.78	53.93
VIT_10s0003g01790.t01	Wine grape	nucleus	50.95	47.21
VIT_19s0014g00880.t01	Wine grape	cytosol	21.2	39.18
VIT_02s0087g00430.t01	Wine grape	nucleus	12.97	29.08
VIT_10s0003g04710.t01	Wine grape	plastid	16.14	23.72

Protein Annotations

EntrezGene:100249673	wikigene:100249673	MapMan:11.3.2.4	MapMan:15.5.39	InterPro:BES1_N	InterPro:BZR
ProteinID:CCB44478	ProteinID:CCB44478.1	UniProt:F6GWZ2	EMBL:FN594959	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009742	GO:GO:0009987	EntrezGene:LOC100249673
wikigene:LOC100249673	PFAM:PF05687	PANTHER:PTHR31506	PANTHER:PTHR31506:SF6	TIGR:TC57877	UniParc:UPI0001982FAC
ArrayExpress:VIT_04s0023g01250	EnsemblPlantsGene:VIT_04s0023g01250	EnsemblPlants:VIT_04s0023g01250.t01	unigene:Vvi.260	RefSeq:XP_002273547	RefSeq:XP_002273547.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:17661920..17664267

Molecular Weight (calculated)

33933.5 Da

IEP (calculated)

9.035

GRAVY (calculated)

-0.631

Length

316 amino acids

Sequence
(BLAST)

001: MAGGGSSGRL PTWKERENNK KRERRRRAIA AKIYAGLRAQ GNYKLPKHCD NNEVLKALCS EAGWTVEEDG TTYRKGCKPP PTEIAGASAN ISACSSMQPS
101: PQSSSFPSPV PSYHASPSSS SFPSPTRFDG NPSSYLLPFL RNLASIPTSL PPLRISNSAP VTPPLSSPTS RGSKRKPDWE SFSNGSLNSF RHPLFAVSAP
201: SSPTRRNHLT PATIPECDES DASTVDSGRW VSFQTVAPQA APSSPTFNLV KPVAMECSIP NAVDEHGGLG WGAAAERGRP EFEFESGRVK AWEGERIHEV
301: GVDELELTLG SGKTRG

Best Arabidopsis Sequence Match ( AT1G75080.1 )
(BLAST)

001: MTSDGATSTS AAAAAAAAAA ARRKPSWRER ENNRRRERRR RAVAAKIYTG LRAQGDYNLP KHCDNNEVLK ALCVEAGWVV EEDGTTYRKG CKPLPGEIAG
101: TSSRVTPYSS QNQSPLSSAF QSPIPSYQVS PSSSSFPSPS RGEPNNNMSS TFFPFLRNGG IPSSLPSLRI SNSCPVTPPV SSPTSKNPKP LPNWESIAKQ
201: SMAIAKQSMA SFNYPFYAVS APASPTHRHQ FHTPATIPEC DESDSSTVDS GHWISFQKFA QQQPFSASMV PTSPTFNLVK PAPQQMSPNT AAFQEIGQSS
301: EFKFENSQVK PWEGERIHDV GMEDLELTLG NGKARG

Arabidopsis Description

BZR1Protein BRASSINAZOLE-RESISTANT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S307]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.