Factsheet for Zm00001d011210_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044293_P007	Maize	cytosol	59.26	87.17
TraesCS3A01G208900.1	Wheat	cytosol	51.08	76.65
TraesCS3D01G211800.1	Wheat	cytosol	50.72	76.22
Os01t0581400-01	Rice	cytosol, plasma membrane	51.98	75.56
HORVU3Hr1G050430.6	Barley	cytosol	50.9	75.47
TraesCS3B01G239200.2	Wheat	cytosol	50.81	75.33
KRH05306	Soybean	cytosol	26.26	57.71
CDY67812	Canola	cytosol	30.67	56.74
Bra008047.1-P	Field mustard	cytosol	19.78	56.12
AT5G12000.1	Thale cress	cytosol	35.34	56.06
KRH23263	Soybean	cytosol	23.65	55.96
GSMUA_Achr8P05660_001	Banana	cytosol	40.83	55.57
CDX69713	Canola	cytosol	34.53	55.01
Bra008921.1-P	Field mustard	cytosol	34.53	55.01
CDX97160	Canola	cytosol	34.62	55.0
VIT_09s0002g01830.t01	Wine grape	cytosol	31.2	54.22
Bra023358.1-P	Field mustard	cytosol	33.54	53.9
VIT_04s0008g01360.t01	Wine grape	cytosol, nucleus, plastid	35.43	53.83
Zm00001d053588_P001	Maize	cytosol	34.17	52.7
PGSC0003DMT400076836	Potato	cytosol	32.28	52.26
Solyc06g043250.2.1	Tomato	cytosol	32.1	51.97
PGSC0003DMT400075335	Potato	nucleus	31.74	51.61
Solyc12g096010.1.1	Tomato	cytosol	30.76	51.58
AT5G26150.2	Thale cress	cytosol	32.64	51.05
CDY24991	Canola	cytosol	32.19	50.85
CDY05538	Canola	cytosol	32.19	50.85
Bra020547.1-P	Field mustard	cytosol	32.19	50.85
KRH15730	Soybean	cytosol	29.95	48.4
KRH61536	Soybean	cytosol	29.77	46.04
Bra025965.1-P	Field mustard	cytosol, nucleus, plastid	23.56	45.8
KRH10056	Soybean	nucleus	28.33	45.32
Zm00001d052067_P004	Maize	cytosol	31.83	44.64
KRH47533	Soybean	plastid	29.14	44.32
Zm00001d045056_P002	Maize	nucleus	31.3	44.22
CDX96431	Canola	nucleus	26.35	42.1
AT1G72760.2	Thale cress	cytosol	26.44	42.0
CDX96762	Canola	cytosol	26.53	41.78
AT1G17540.1	Thale cress	cytosol	27.25	41.62
CDX72942	Canola	cytosol	26.44	41.47
CDY48312	Canola	cytosol, nucleus, plastid	27.16	41.26
CDX91180	Canola	cytosol	33.45	41.1
CDY49864	Canola	cytosol, nucleus, plastid	25.45	40.78
CDX83902	Canola	cytosol	26.26	40.44
CDY53871	Canola	cytosol, nucleus, plastid	25.27	40.43
Solyc06g062820.2.1	Tomato	cytosol	29.05	39.68
CDY26235	Canola	cytosol, nucleus, plastid	27.16	39.32
Bra016035.1-P	Field mustard	cytosol, nucleus, plasma membrane	24.1	38.84
PGSC0003DMT400012520	Potato	cytosol	26.71	38.72
Bra016596.1-P	Field mustard	plasma membrane	26.35	38.4
Zm00001d046364_P001	Maize	cytosol	19.78	33.33
Zm00001d053876_P011	Maize	plastid	22.48	30.71
Zm00001d053587_P001	Maize	plastid	20.14	30.35
Zm00001d045397_P001	Maize	cytosol	19.06	28.01
Zm00001d029829_P001	Maize	cytosol	13.76	24.8
Zm00001d020416_P002	Maize	cytosol	19.33	24.05
Zm00001d051397_P001	Maize	nucleus	17.72	22.85
Zm00001d045230_P001	Maize	cytosol	15.02	22.06
Zm00001d002693_P001	Maize	plastid	15.74	20.0
Zm00001d051875_P001	Maize	mitochondrion	13.58	17.1
Zm00001d051399_P002	Maize	cytosol	12.5	14.54
Zm00001d003621_P002	Maize	cytosol, plastid	15.56	8.17

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100216601	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.40.50.620	Gene3D:3.50.50.60
UniProt:A0A1D6FXS3	ProteinID:AQK96213.1	ncoils:Coil	InterPro:FAD/NAD-bd_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR014729	InterPro:IPR036188	InterPro:Kinase-like_dom_sf	PFAM:PF00069
PFAM:PF00582	PFAM:PF05834	PRINTS:PR00411	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27003
PANTHER:PTHR27003:SF145	InterPro:Prot_kinase_dom	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SUPFAM:SSF51905	SUPFAM:SSF52402
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000843E3B6	InterPro:UspA	EnsemblPlantsGene:Zm00001d011210	EnsemblPlants:Zm00001d011210_P001
EnsemblPlants:Zm00001d011210_T001	SEG:seg	:	:	:	:

Description

lycopene epsilon cyclase1 lycopene epsilon cyclase1

Coordinates

chr8:+:143020695..143027838

Molecular Weight (calculated)

122350.0 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.270

Length

1112 amino acids

Sequence
(BLAST)

0001: MGLSGATISA PLGCCVLRCG AVGGGKALKA DAERWRRAGW SRRVGGPKVR CVATEKHDET AAVGAAVGVD FADEEDYRKG GGGELLYVQM QSTKPMESQS
0101: KIASKLSPIS DENTVLDLVI IGCGPAGLSL ASESAKKGLT VGLIGPDLPF TNNYGVWEDE FKDLGLESCI EHVWKDTIVY LDNNKPILIG RSYGRVHRDL
0201: LHEELLKRCY EAGVTYLNSK VDKIIESPDG HRVVCCDKGR EIICRLAIVA SGAASGRLLE YEETCLASKD AMSFDLLKKR LMYRLNAMGI RILKVYEEEW
0301: SYIPVGGSLP NTDQKNLAFG AAASMVHPAT GYSVVRSLSE APRYASVISD ILGNRVPAEY MLGNSQNYSP SMLGGPLSPD EYWVISPPAL LHQPASTIVV
0401: AIDRDRNSQL AVKWVVDHLL SGASHIVLLH VAVHYHTTHG FAMVETTQGA LEAEMKEIFV PYRGFFNRNG VEVSEVVLEE ADVSKAILDC TVSALASGRK
0501: FKNADVPSTL MKCAPDYCNI YVVAKGKSVN VRLAKCGVPP MHTGADIASD TDSLRESVLY MRRGSRGHLP RVTPDAWRSI DGRTPPELST RPLFRERLLS
0601: SSATTKNFVV LPGKDNFETS SRSARHDSLG GDLDFGPSTR FSYIDLGENL DMSTTLPALE PMSPATGAQR DTEAEMRRLR LELKQTMDMY NAACKEAINA
0701: KQRAKEMHMM KLEEARRLEE ARNAEEAALA VAEMEKAKCR AAMEAAEAAQ RLADLEAQRR RNAEVRARRE ADEKVRALDA ISNHDFRYRK YHIDEIEMAT
0801: ERFSDELKIG EGGYGPVYRA SLDHTPVAIK VLRPDAHQGR KQFLQEVEVL SCIRHPNMVL LLGACPEYGC LVYEYMDHGS LEDRLFRRGG TPPLAWAQRF
0901: RIAAEIATAL LFLHQTKPEP LVHRDLKPAN ILLDRNYVSK ISDVGLARLV PPSVADNVTQ YRLTATAGTF CYIDPEYQQT GKLGVKSDIY SLGVLLLQVV
1001: TARPPMGLTH HVEKAIDAGT FEQMLDITVK DWPVEEALGY AKLALKCTEM RRRDRPDLAT VILPELNRLR NLGHAYEARM SAARANGGSG ESGAQISGDS
1101: TTVGGSWETA DS

Best Arabidopsis Sequence Match ( AT2G24370.1 )
(BLAST)

001: MWMPKNNNVG VKEGGSSGVV AVAIDKDKSS QHALKWAVDN LLQRGQSVIL VHVKLRPSPL NNSASLHASS AKLSQDSSLV CRDPEGISKE IFLPFRCFCT
101: RKDIQCQDVL LEESDVAKAL VEYVNQAAIE VLVVGSSSKG GFLRFNKPTD IPGSITKNAP DFCTVYIISK GKIQTMRSAS RSAPMTAPLR SSVQPPSLKP
201: PQPMPSTSAN SLRADRRSFE SNQRRSVEDQ QRRSMEDQQR RSIDDQSESF RSPFTRRGNG RSYGDLTVPE SDISFISSGR PSIDRIFPSL YDNNDPSRTP
301: PRLSNFSDMD YSSSLDQSSN YGRRSVDMNS PTDFESERFS SASQSIDDVE AEMRRLKLEL KQTMEMYSTA CKEALTAKQK ATELQRWKLE EERKLEEARN
401: AEEAALAIAE KEKAKSKAAM EAAEAAQRIA ELEAKKRVNA EMKALKESEE KTKALTALAN SDVRYRKYSI EDIELATEFF AEKYKIGEGG YGPVYKCYLD
501: HTPVAVKVLR PDAAQGRSQF QQEVEVLSCI RHPNMVLLLG ACPECGCLVY EFMANGSLED RLFRLGNSPP LSWQMRFRIA AEIGTGLLFL HQAKPEPLVH
601: RDLKPGNILL DRNFVSKISD VGLARLVPPT VADTVTQYRM TSTAGTFCYI DPEYQQTGML GVKSDIYSLG IMFLQLITAK PPMGLTHYVE RALEKGTLVD
701: LLDPVVSDWP MEDTEEFAKL ALKCAELRRK DRPDLAKVIL PELNRLRTLA DESSHSVVVG NSPLPSPTGS QSSLKLEHMS GASISVPQ

Arabidopsis Description

Kinase with adenine nucleotide alpha hydrolases-like domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PF03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.