Factsheet for Zm00001d034422_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0151g00870.t01	Wine grape	nucleus	90.48	7.06
KRH77859	Soybean	nucleus	3.97	0.45
KRH77858	Soybean	nucleus	3.97	0.38
KRH27635	Soybean	nucleus	3.17	0.31
CDX74615	Canola	nucleus	2.38	0.3
Bra035350.1-P	Field mustard	nucleus	2.38	0.29
CDY37657	Canola	nucleus	2.38	0.28
VIT_05s0020g03420.t01	Wine grape	nucleus	3.17	0.28
Zm00001d028749_P002	Maize	mitochondrion	2.38	0.24
Zm00001d013278_P004	Maize	nucleus	2.38	0.21
AT4G14920.3	Thale cress	nucleus	1.59	0.18
AT5G36740.1	Thale cress	nucleus	1.59	0.17
KRH71410	Soybean	nucleus	1.59	0.17
AT5G36670.1	Thale cress	nucleus	1.59	0.17
Zm00001d037529_P001	Maize	nucleus	0.79	0.11
Solyc09g076010.2.1	Tomato	nucleus	0.79	0.07
Zm00001d034004_P004	Maize	nucleus	0.79	0.07
Zm00001d045631_P002	Maize	cytosol	0.0	0.0
KRH27633	Soybean	cytosol, nucleus	0.0	0.0
Zm00001d045629_P002	Maize	plastid	0.0	0.0
Zm00001d042003_P001	Maize	plastid	0.0	0.0
Zm00001d035862_P003	Maize	nucleus	0.0	0.0
AT1G05380.3	Thale cress	nucleus	0.0	0.0
Zm00001d028660_P013	Maize	endoplasmic reticulum	0.0	0.0
Zm00001d027880_P002	Maize	nucleus	0.0	0.0
Zm00001d026698_P011	Maize	nucleus	0.0	0.0
Zm00001d022583_P001	Maize	nucleus	0.0	0.0
Zm00001d018912_P007	Maize	nucleus	0.0	0.0
Zm00001d014909_P003	Maize	nucleus	0.0	0.0
Zm00001d012354_P001	Maize	cytosol	0.0	0.0
Zm00001d008232_P001	Maize	cytosol	0.0	0.0
Zm00001d003648_P002	Maize	nucleus	0.0	0.0
Bra020653.1-P	Field mustard	nucleus	0.0	0.0
Solyc09g065340.2.1	Tomato	nucleus	0.0	0.0
Solyc03g005170.2.1	Tomato	nucleus	0.0	0.0
CDY10104	Canola	nucleus	0.0	0.0
CDY47291	Canola	nucleus	0.0	0.0
KRH27632	Soybean	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.8.50	MapMan:17.1.3.1.20	InterPro:30s_Rbsml_prot_S13_C	Gene3D:4.10.910.10	UniProt:A0A1D6L7J3	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR001892
InterPro:IPR027437	ProteinID:ONM10222.1	ProteinID:ONM10223.1	PFAM:PF00416	PIRSF:PIRSF002134	ScanProsite:PS00646
PFscan:PS50159	PANTHER:PTHR10871	PANTHER:PTHR10871:SF18	InterPro:Ribosomal_S13	InterPro:Ribosomal_S13-like_H2TH	InterPro:Ribosomal_S13_CS
SUPFAM:SSF46946	UniParc:UPI0008443042	EnsemblPlantsGene:Zm00001d034422	EnsemblPlants:Zm00001d034422_P001	EnsemblPlants:Zm00001d034422_T001	SEG:seg

Description

40S ribosomal protein S18

Coordinates

chr1:-:292520815..292522961

Molecular Weight (calculated)

14773.1 Da

IEP (calculated)

11.626

GRAVY (calculated)

-0.879

Length

126 amino acids

Sequence
(BLAST)

001: MFAMTSIKGV GRRFSNIVCK KADIDMNKRA GELTPEELER LMTVVANPRQ FKVPDWFLNR KKDYKDGRFS QVVSNALDMK LRDDLERLKK IRNHRGLRHY
101: WGLRVRGQHT KTTGRRGKTV GVSKKR

Best Arabidopsis Sequence Match ( AT1G22780.1 )
(BLAST)

001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR

Arabidopsis Description

RPS18B40S ribosomal protein S18 [Source:UniProtKB/Swiss-Prot;Acc:P34788]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.