Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G36740.1 | Thale cress | nucleus | 96.56 | 98.55 |
| CDX74615 | Canola | nucleus | 55.99 | 66.93 |
| CDY37657 | Canola | nucleus | 56.66 | 63.47 |
| Bra035350.1-P | Field mustard | nucleus | 55.57 | 63.08 |
| Os03t0747600-02 | Rice | nucleus | 21.96 | 34.25 |
| GSMUA_Achr4P21300_001 | Banana | nucleus | 22.38 | 32.6 |
| AT1G05380.3 | Thale cress | nucleus | 25.31 | 26.54 |
| KRH71410 | Soybean | nucleus | 25.82 | 26.1 |
| AT4G14920.3 | Thale cress | nucleus | 24.48 | 25.64 |
| TraesCS5D01G396100.1 | Wheat | nucleus | 24.9 | 21.66 |
| OQU90997 | Sorghum | nucleus | 24.98 | 21.63 |
| TraesCS5A01G386300.1 | Wheat | nucleus | 24.81 | 21.59 |
| Solyc09g065340.2.1 | Tomato | nucleus | 24.56 | 21.54 |
| TraesCS5B01G391200.1 | Wheat | nucleus | 24.73 | 21.1 |
| HORVU5Hr1G094760.8 | Barley | nucleus | 23.64 | 20.89 |
| AT5G63900.1 | Thale cress | nucleus | 9.72 | 20.83 |
| GSMUA_Achr5P02880_001 | Banana | nucleus | 23.55 | 19.12 |
| TraesCS2A01G235700.1 | Wheat | nucleus | 23.81 | 18.95 |
| EER95921 | Sorghum | nucleus | 23.14 | 18.89 |
| TraesCS2B01G257600.3 | Wheat | nucleus | 23.64 | 18.85 |
| TraesCS2D01G238100.1 | Wheat | nucleus | 23.64 | 18.83 |
| AT3G14980.2 | Thale cress | nucleus | 18.52 | 18.59 |
| VIT_07s0151g00870.t01 | Wine grape | nucleus | 24.48 | 18.08 |
| HORVU2Hr1G054040.7 | Barley | nucleus | 21.63 | 17.7 |
| AT2G37520.1 | Thale cress | nucleus | 11.4 | 16.41 |
| AT5G58610.3 | Thale cress | nucleus | 14.67 | 15.98 |
| AT3G53680.2 | Thale cress | nucleus | 11.23 | 15.9 |
| AT2G36720.1 | Thale cress | cytosol | 10.98 | 13.01 |
| AT2G27980.1 | Thale cress | cytosol, plastid | 11.06 | 12.31 |
| Os07t0173400-01 | Rice | cytosol | 4.78 | 11.35 |
| Zm00001d034422_P001 | Maize | cytosol | 0.17 | 1.59 |
| Os07t0173700-00 | Rice | plastid | 0.17 | 1.35 |
| Os07t0173501-00 | Rice | cytosol, extracellular | 0.17 | 1.32 |
Protein Annotations
| MapMan:15.5.30 | Gene3D:3.30.40.10 | EntrezGene:833632 | EntrezGene:833643 | ProteinID:AED94096.1 | ArrayExpress:AT5G36670 |
| EnsemblPlantsGene:AT5G36670 | RefSeq:AT5G36670 | TAIR:AT5G36670 | RefSeq:AT5G36670-TAIR-G | EnsemblPlants:AT5G36670.1 | TAIR:AT5G36670.1 |
| InterPro:AT_hook_DNA-bd_motif | Unigene:At.55161 | UniProt:F4K4G6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR019787 | InterPro:Jas | RefSeq:NP_568537.1 |
| PFAM:PF00628 | PFAM:PF16135 | PO:PO:0000293 | PRINTS:PR00929 | ScanProsite:PS01359 | PFscan:PS50016 |
| PANTHER:PTHR42672 | PANTHER:PTHR42672:SF16 | SMART:SM00249 | SMART:SM00384 | SUPFAM:SSF57903 | UniParc:UPI0000162743 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
RING/FYVE/PHD zinc finger superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4G6]
Coordinates
chr5:+:14401491..14406730
Molecular Weight (calculated)
133777.0 Da
IEP (calculated)
6.160
GRAVY (calculated)
-0.722
Length
1193 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLETNEQKGF DLNVCASIED FSESDIKAEG ETDSLVDGNV ENVIEIKDKK KVIEREILIT RRVLRSGSVA RDLVNSDKHC KAVKRKGNVV SGGSSVDEVK
0101: EEVKQECVKS LVPEEIRGDD FRSEVKVESK DDRSDDGKEE KVQRKRGRPR KFGMSSQSDD NGLISNCKLR TSLGKKKELV GDDNVEKLVG GSCFNKEKAE
0201: VKLEHGEYAE DKEILGLDFR SQVKVEIKDD ECGIVELHDE ELQVKRKRGR PRKVQISSQS DESRPNTNCK LARTPELSSQ SSVDRISLSR LRGRPPKTKE
0301: TSVSLYIEKG PESNGRRMVR KRGRPPTPQK KRKSGMTDES DWKAKKRLKL CESPLESRHN NPLIDDERMI GEQRSKQTEA GGHSRSKSKK MLSDRILQLL
0401: LTAGWTVEYR PRNGRAYQDA VYLNPEGKTH WSVTKAYQVY KKQLESNPND QKNSTTGSGF GLLPEEDLHL LERTIQKKRS DTGKQRSKLK DRDTNDILVS
0501: TKGTGKIKRE EKHSRKRCTP SARSSLKDVD SKEDGYILFE GKRTMLGWMI DSTIVPLNGK VQCMDCKKTD ILLEGIITKE GIRCNCCDEV FSVLDFEVHA
0601: GGNRNQPFKS LYLEGGNSLL QCLHESMNKQ SESQLKGYHF VDFGSGDPND DTCGICGDGG DLICCDGCPS TFHQSCLDIK KFPSGAWYCY NCSCKFCEKD
0701: EAAKHETSTL PSLSSCRLCE EKCSKHYPHT LADHQACINQ DGTVPGERST DSFCGKYCQE LFEELQLFIG VKHPLPEGFS WSFLRRFELP SEVADCDISE
0801: KIAYNAKMAV AFSVMDECFS PLVDHRSGVN LLQNIVYNFG SNFHRLDFSS FLTAVLERGD EIIAVASIRI HGNQLAEMPF IGTRYMYRRQ GMCRRLMDGI
0901: ESFVAYFSQM FLAISEVLLD VWQFCCYPAC FGDGPFCFFS GFGFAPVNDS EKKTIKNLNL LVFPGVDMLG KSLVKEKITD SVVSSPNGLV LLAPEMTLPV
1001: DVEENKPEES KDSAHERNCA TAGVESPSNP VDSCLKLTYV EEGDNDRESN LKLLDGSVEE KEDTKKLTDI DINSLPDEVD DSHADQSDTK EQEIDDKEDK
1101: TPLSDDGCEG KAEGTKESNQ QPDSNKVDNS QPLGNGGTGE ELGNRTLALK REVTPTLRAS PRLIQRSWRT SRVNQKFTGT TNAVLLDSPH RCV
0101: EEVKQECVKS LVPEEIRGDD FRSEVKVESK DDRSDDGKEE KVQRKRGRPR KFGMSSQSDD NGLISNCKLR TSLGKKKELV GDDNVEKLVG GSCFNKEKAE
0201: VKLEHGEYAE DKEILGLDFR SQVKVEIKDD ECGIVELHDE ELQVKRKRGR PRKVQISSQS DESRPNTNCK LARTPELSSQ SSVDRISLSR LRGRPPKTKE
0301: TSVSLYIEKG PESNGRRMVR KRGRPPTPQK KRKSGMTDES DWKAKKRLKL CESPLESRHN NPLIDDERMI GEQRSKQTEA GGHSRSKSKK MLSDRILQLL
0401: LTAGWTVEYR PRNGRAYQDA VYLNPEGKTH WSVTKAYQVY KKQLESNPND QKNSTTGSGF GLLPEEDLHL LERTIQKKRS DTGKQRSKLK DRDTNDILVS
0501: TKGTGKIKRE EKHSRKRCTP SARSSLKDVD SKEDGYILFE GKRTMLGWMI DSTIVPLNGK VQCMDCKKTD ILLEGIITKE GIRCNCCDEV FSVLDFEVHA
0601: GGNRNQPFKS LYLEGGNSLL QCLHESMNKQ SESQLKGYHF VDFGSGDPND DTCGICGDGG DLICCDGCPS TFHQSCLDIK KFPSGAWYCY NCSCKFCEKD
0701: EAAKHETSTL PSLSSCRLCE EKCSKHYPHT LADHQACINQ DGTVPGERST DSFCGKYCQE LFEELQLFIG VKHPLPEGFS WSFLRRFELP SEVADCDISE
0801: KIAYNAKMAV AFSVMDECFS PLVDHRSGVN LLQNIVYNFG SNFHRLDFSS FLTAVLERGD EIIAVASIRI HGNQLAEMPF IGTRYMYRRQ GMCRRLMDGI
0901: ESFVAYFSQM FLAISEVLLD VWQFCCYPAC FGDGPFCFFS GFGFAPVNDS EKKTIKNLNL LVFPGVDMLG KSLVKEKITD SVVSSPNGLV LLAPEMTLPV
1001: DVEENKPEES KDSAHERNCA TAGVESPSNP VDSCLKLTYV EEGDNDRESN LKLLDGSVEE KEDTKKLTDI DINSLPDEVD DSHADQSDTK EQEIDDKEDK
1101: TPLSDDGCEG KAEGTKESNQ QPDSNKVDNS QPLGNGGTGE ELGNRTLALK REVTPTLRAS PRLIQRSWRT SRVNQKFTGT TNAVLLDSPH RCV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.