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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • plastid 1
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 26072143
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0794700-01 Rice plasma membrane 100.0 100.0
Os07t0173700-00 Rice plastid 96.05 98.65
VIT_07s0151g00870.t01 Wine grape nucleus 89.47 8.42
Os01t0965700-00 Rice endoplasmic reticulum, extracellular 0.66 0.48
KRH77859 Soybean nucleus 3.29 0.45
KRH77858 Soybean nucleus 3.29 0.38
KRH27635 Soybean nucleus 2.63 0.31
CDX74615 Canola nucleus 1.97 0.3
Bra035350.1-P Field mustard nucleus 1.97 0.29
CDY37657 Canola nucleus 1.97 0.28
VIT_05s0020g03420.t01 Wine grape nucleus 2.63 0.28
AT4G14920.3 Thale cress nucleus 1.32 0.18
AT5G36740.1 Thale cress nucleus 1.32 0.17
KRH71410 Soybean nucleus 1.32 0.17
AT5G36670.1 Thale cress nucleus 1.32 0.17
EER95921 Sorghum nucleus 1.32 0.14
Solyc09g076010.2.1 Tomato nucleus 0.66 0.07
Os06t0101000-01 Rice nucleus, plastid 0.0 0.0
Zm00001d018912_P007 Maize nucleus 0.0 0.0
AT1G05380.3 Thale cress nucleus 0.0 0.0
TraesCS2D01G238100.1 Wheat nucleus 0.0 0.0
TraesCS2B01G257600.3 Wheat nucleus 0.0 0.0
TraesCS2A01G235700.1 Wheat nucleus 0.0 0.0
Solyc09g065340.2.1 Tomato nucleus 0.0 0.0
Solyc03g005170.2.1 Tomato nucleus 0.0 0.0
Os07t0173400-01 Rice cytosol 0.0 0.0
Os06t0731100-00 Rice nucleus 0.0 0.0
KRH27632 Soybean nucleus 0.0 0.0
Os04t0691700-01 Rice nucleus 0.0 0.0
Os04t0433900-00 Rice nucleus 0.0 0.0
Bra020653.1-P Field mustard nucleus 0.0 0.0
Os03t0747600-02 Rice nucleus 0.0 0.0
Os03t0278700-01 Rice cytosol, nucleus 0.0 0.0
CDY10104 Canola nucleus 0.0 0.0
CDY47291 Canola nucleus 0.0 0.0
HORVU2Hr1G054040.7 Barley nucleus 0.0 0.0
KRH27633 Soybean cytosol, nucleus 0.0 0.0
Protein Annotations
Gene3D:1.10.8.50MapMan:17.1.3.1.20InterPro:30s_Rbsml_prot_S13_CGene3D:4.10.910.10EntrezGene:4334407EntrezGene:4342526
ProteinID:AAO37983.1ProteinID:AAT76427.1ProteinID:ABF99325.1EMBL:AK058881EMBL:AK059548ProteinID:BAC24844.1
ProteinID:BAD30787.1ProteinID:BAF13455.1ProteinID:BAF20921.2ProteinID:BAS86821.1ProteinID:BAT00263.1ProteinID:EEE66653.1
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015935
GO:GO:0019538GO:GO:0042254InterPro:IPR001892InterPro:IPR027437HAMAP:MF_01315EnsemblPlantsGene:Os07g0173501
EnsemblPlants:Os07t0173501-00PFAM:PF00416PIRSF:PIRSF002134ScanProsite:PS00646PFscan:PS50159PANTHER:PTHR10871
PANTHER:PTHR10871:SF18UniProt:Q8H590InterPro:Ribosomal_S13InterPro:Ribosomal_S13-like_H2THInterPro:Ribosomal_S13_CSSUPFAM:SSF46946
UniParc:UPI0000002701RefSeq:XP_015630007.1RefSeq:XP_015644795.1SEG:seg::
Description
Similar to 40S ribosomal protein S18. (Os07t0173501-00)
Coordinates
chr7:+:3872177..3875018
Molecular Weight (calculated)
17663.7 Da
IEP (calculated)
11.420
GRAVY (calculated)
-0.751
Length
152 amino acids
Sequence
(BLAST)
001: MSLIAGEDFQ HILRLLNTNV DGKQKIMFAL TSIKGVGRRF SNIACKKADI DMNKRAGELT PEELERLMTV VANPRQFKVP DWFLNRKKDY KDGRFSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
Best Arabidopsis Sequence Match ( AT1G22780.1 )
(BLAST)
001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
Arabidopsis Description
RPS18B40S ribosomal protein S18 [Source:UniProtKB/Swiss-Prot;Acc:P34788]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.