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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 1
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 21433289
plastid: 27992503
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0173501-00 Rice cytosol, extracellular 98.65 96.05
Os03t0794700-01 Rice plasma membrane 98.65 96.05
VIT_07s0151g00870.t01 Wine grape nucleus 89.86 8.24
Os01t0965700-00 Rice endoplasmic reticulum, extracellular 0.68 0.48
KRH77859 Soybean nucleus 3.38 0.45
KRH77858 Soybean nucleus 3.38 0.38
KRH27635 Soybean nucleus 2.7 0.31
CDX74615 Canola nucleus 2.03 0.3
Bra035350.1-P Field mustard nucleus 2.03 0.29
CDY37657 Canola nucleus 2.03 0.28
VIT_05s0020g03420.t01 Wine grape nucleus 2.7 0.28
AT4G14920.3 Thale cress nucleus 1.35 0.18
AT5G36740.1 Thale cress nucleus 1.35 0.17
KRH71410 Soybean nucleus 1.35 0.17
AT5G36670.1 Thale cress nucleus 1.35 0.17
Solyc09g076010.2.1 Tomato nucleus 0.68 0.07
CDY10104 Canola nucleus 0.0 0.0
KRH27633 Soybean cytosol, nucleus 0.0 0.0
CDY47291 Canola nucleus 0.0 0.0
Solyc09g065340.2.1 Tomato nucleus 0.0 0.0
Solyc03g005170.2.1 Tomato nucleus 0.0 0.0
Os07t0173400-01 Rice cytosol 0.0 0.0
Os06t0731100-00 Rice nucleus 0.0 0.0
Os06t0101000-01 Rice nucleus, plastid 0.0 0.0
Os04t0691700-01 Rice nucleus 0.0 0.0
Os04t0433900-00 Rice nucleus 0.0 0.0
Os03t0747600-02 Rice nucleus 0.0 0.0
Os03t0278700-01 Rice cytosol, nucleus 0.0 0.0
Bra020653.1-P Field mustard nucleus 0.0 0.0
AT1G05380.3 Thale cress nucleus 0.0 0.0
KRH27632 Soybean nucleus 0.0 0.0
Protein Annotations
Gene3D:1.10.8.50MapMan:17.1.3.1.20InterPro:30s_Rbsml_prot_S13_CGene3D:4.10.910.10ProteinID:BAC24846.1ProteinID:BAD30789.1
ProteinID:BAT00265.1ProteinID:EAZ38860.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0015935GO:GO:0019538GO:GO:0042254InterPro:IPR001892InterPro:IPR027437
HAMAP:MF_01315EnsemblPlantsGene:Os07g0173700EnsemblPlants:Os07t0173700-00PFAM:PF00416PIRSF:PIRSF002134ScanProsite:PS00646
PFscan:PS50159PANTHER:PTHR10871PANTHER:PTHR10871:SF18UniProt:Q8H588InterPro:Ribosomal_S13InterPro:Ribosomal_S13-like_H2TH
InterPro:Ribosomal_S13_CSSUPFAM:SSF46946UniParc:UPI00000AD5F3SEG:seg::
Description
40S ribosomal protein S18. (Os07t0173700-00)
Coordinates
chr7:+:3883518..3885696
Molecular Weight (calculated)
17293.2 Da
IEP (calculated)
11.420
GRAVY (calculated)
-0.832
Length
148 amino acids
Sequence
(BLAST)
001: MGEDFQHILR LLNTNVDGKQ KIMFALTSIK GIGRRFSNIA CKKADIDMNK RAGELTPEEL ERLMTVVANP RQFKVPDWFL NRKKDYKDGR FSQVVSNALD
101: MKLRDDLERL KKIRNHRGLR HYWGLRVRGQ HTKTTGRRGK TVGVSKKR
Best Arabidopsis Sequence Match ( AT1G22780.1 )
(BLAST)
001: MSLVANEEFQ HILRVLNTNV DGKQKIMFAL TSIKGIGRRL ANIVCKKADV DMNKRAGELS AAEIDNLMTI VANPRQFKIP DWFLNRQKDY KDGKYSQVVS
101: NALDMKLRDD LERLKKIRNH RGLRHYWGLR VRGQHTKTTG RRGKTVGVSK KR
Arabidopsis Description
RPS18B40S ribosomal protein S18 [Source:UniProtKB/Swiss-Prot;Acc:P34788]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.