Factsheet for Zm00001d050133_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51912	Canola	cytosol	41.01	73.46
Zm00001d019988_P001	Maize	plastid	84.13	34.68
Zm00001d023278_P002	Maize	extracellular, vacuole	31.22	30.33
Zm00001d005535_P002	Maize	plastid	73.55	25.91
Zm00001d029179_P001	Maize	extracellular	0.79	4.76
Zm00001d050134_P001	Maize	plastid	6.08	3.71
Zm00001d005151_P004	Maize	plastid	4.76	3.19
Zm00001d037282_P001	Maize	plastid	1.32	3.09
Zm00001d018301_P001	Maize	extracellular, plasma membrane	1.85	2.86
Zm00001d042264_P006	Maize	mitochondrion, plastid	3.97	2.59
Zm00001d034851_P001	Maize	plastid	2.38	2.11
Zm00001d035282_P001	Maize	mitochondrion	0.79	0.99

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00270+1.1.1.3	KEGG:00300+1.1.1.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.4
UniProt:A0A1D6Q023	ProteinID:AQK52006.1	InterPro:Asp/hSer_DH_NAD-bd	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004412	GO:GO:0005488	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009082	GO:GO:0009086	GO:GO:0009088	GO:GO:0009097	GO:GO:0009987
GO:GO:0016491	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat	InterPro:HDH_short
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00742	PFAM:PF03447	PIRSF:PIRSF036497	ScanProsite:PS01042	PANTHER:PTHR43070
PANTHER:PTHR43070:SF2	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0008447245	EnsemblPlantsGene:Zm00001d050133	EnsemblPlants:Zm00001d050133_P001
EnsemblPlants:Zm00001d050133_T001	SEG:seg	:	:	:	:

Description

Homoserine dehydrogenase

Coordinates

chr4:-:68209203..68220619

Molecular Weight (calculated)

41354.4 Da

IEP (calculated)

5.303

GRAVY (calculated)

-0.116

Length

378 amino acids

Sequence
(BLAST)

001: MLAVDFVLPL DDVPAEVEGF FGSLMGHEGA PVGGVVAVPL EAAVLKENMN IDLRVMGIAG SRTMLLSDIG VDLTQWKEKL QTEAEPANLD KFVHHLSENH
101: FFPNRVLVDC TADTSVASHY YDWLKKGIHV ITPNKKANSG PLDRYLKLRT LQRASYTHYF YEATVGAGLP IISTLRGLLE TGDKILRIEG IFSGTLSYIF
201: NNFEGARTFS DVVAEAKKAG YTEPDPRDDL SGTDVARKVI ILARESGLGL ELSDIPVRSL VPEALKSCTS ADEYMQKLPS FDEDWARERK NAEAAGEVLR
301: YVGVVDVVNK KGQVELRAYK RDHPFAQLSG SDNIIAFTTS RYKDQPLIVR GPGAGAEVTA GGVFCDILRL SSYLGAPS

Best Arabidopsis Sequence Match ( AT5G21060.1 )
(BLAST)

001: MKKIPVLLMG CGGVGRHLLQ HIVSCRSLHA KMGVHIRVIG VCDSKSLVAP MDVLKEELND ELLSEVCLIK STGSALSKLG ALGGYRVVHD SELSTETEEI
101: AKLLGKSTGL AVVDCSASME TIEILMKAVD LGCCIVLANK KPVTSTLEHY DKLALHPRFI RHESTVGAGL PVIASLNRII SSGDPVHRIV GSLSGTLGYV
201: MSELEDGKPL SQVVQAAKKL GYTEPDPRDD LGGMDVARKG LILARLLGKR IIMDSIKIES LYPEEMGPGL MSVDDFLHNG IVKLDQNIEE RVKKASSKGC
301: VLRYVCVIEG SSVQVGIREV SKDSPLGRLR GSDNIVEIYS RCYKEQPLVI QGAGAGNDTT AAGVLADIID LQDLFH

Arabidopsis Description

Homoserine dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F4K6Y8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.