Factsheet for Zm00001d019988_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96488	Sorghum	plastid	94.33	94.33
Os09t0294000-01	Rice	plasma membrane	89.09	89.29
TraesCS5A01G177400.1	Wheat	golgi	87.46	87.65
TraesCS5D01G181600.4	Wheat	plastid	87.13	87.32
TraesCS5B01G174600.1	Wheat	plastid	86.91	87.1
HORVU5Hr1G053950.1	Barley	plastid	86.37	84.71
Zm00001d050133_P001	Maize	plastid	34.68	84.13
GSMUA_Achr5P01800_001	Banana	vacuole	64.99	81.2
Zm00001d050134_P001	Maize	plastid	51.91	76.77
GSMUA_Achr4P28160_001	Banana	plastid	76.55	75.4
VIT_18s0001g03660.t01	Wine grape	mitochondrion, plastid	70.77	74.51
KRH58834	Soybean	endoplasmic reticulum, plastid	71.43	71.51
KRH42738	Soybean	nucleus, plastid	71.43	71.51
Zm00001d005535_P002	Maize	plastid	83.21	71.11
AT4G19710.2	Thale cress	plastid	70.88	70.96
CDY02370	Canola	plastid	70.12	70.74
CDY59140	Canola	plastid	70.88	70.73
Bra013425.1-P	Field mustard	plastid	71.1	70.64
Bra023169.1-P	Field mustard	plastid	70.01	70.63
CDY51915	Canola	plastid	70.77	70.39
CDY51625	Canola	plastid	69.9	70.36
Solyc11g040390.1.1	Tomato	plastid	62.6	70.09
AT1G31230.1	Thale cress	plastid	69.47	69.92
KRG97357	Soybean	cytoskeleton, cytosol, peroxisome	48.75	69.41
Solyc06g064550.2.1	Tomato	plastid	68.05	67.9
PGSC0003DMT400083218	Potato	plastid	68.05	67.68
GSMUA_Achr5P01810_001	Banana	plastid	13.63	49.41
Zm00001d023278_P002	Maize	extracellular, vacuole	14.39	33.93
Zm00001d037282_P001	Maize	plastid	4.91	27.78
Zm00001d018301_P001	Maize	extracellular, plasma membrane	7.2	26.94
Zm00001d005151_P004	Maize	plastid	14.94	24.25
Zm00001d029179_P001	Maize	extracellular	1.64	23.81
Zm00001d034851_P001	Maize	plastid	10.91	23.47
Zm00001d042264_P006	Maize	mitochondrion, plastid	14.5	22.97
Zm00001d035282_P001	Maize	mitochondrion	5.13	15.46

Protein Annotations

KEGG:00260+1.1.1.3	KEGG:00260+2.7.2.4	KEGG:00261+2.7.2.4	KEGG:00270+1.1.1.3	KEGG:00270+2.7.2.4	KEGG:00300+1.1.1.3
KEGG:00300+2.7.2.4	Gene3D:3.30.2130.10	Gene3D:3.30.360.10	Gene3D:3.40.1160.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.4
UniProt:A0A1D6I1D8	InterPro:ACT_dom	InterPro:AceGlu_kinase-like_sf	InterPro:Asp/Glu/Uridylate_kinase	InterPro:Asp/hSer_DH_NAD-bd	InterPro:Asp_kinase
InterPro:Aspartate_kinase_CS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004072
GO:GO:0004412	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009067	GO:GO:0009082	GO:GO:0009086	GO:GO:0009088	GO:GO:0009089	GO:GO:0009097
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016491
GO:GO:0016740	GO:GO:0050661	GO:GO:0055114	InterPro:HDH_CS	InterPro:HDH_cat	InterPro:IPR002912
InterPro:IPR036393	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM54034.1	PFAM:PF00696	PFAM:PF00742	PFAM:PF01842
PFAM:PF03447	ScanProsite:PS00324	ScanProsite:PS01042	PFscan:PS51671	PANTHER:PTHR43070	PANTHER:PTHR43070:SF2
SUPFAM:SSF51735	SUPFAM:SSF53633	SUPFAM:SSF55021	SUPFAM:SSF55347	TIGRFAMs:TIGR00657	UniParc:UPI0008428D4E
EnsemblPlantsGene:Zm00001d019988	EnsemblPlants:Zm00001d019988_P001	EnsemblPlants:Zm00001d019988_T001	SEG:seg	:	:

Description

Homoserine dehydrogenase

Coordinates

chr7:-:83010258..83023722

Molecular Weight (calculated)

99839.5 Da

IEP (calculated)

6.695

GRAVY (calculated)

-0.043

Length

917 amino acids

Sequence
(BLAST)

001: MQSLTVARAL PPAVATARRR PRASSSSREA VLQCWKYELS QDQYLGGSLR IGSSQGSLDI HRSTNLLRPA AASVSVEQDE VNTYLPKGDM WSVHKFGGTC
101: MGTSQRIQSV ANIVLGDSSE RKLIIVSAMS KVTDMMYNLV QKAQSRDDSY TIALEEVFEK HMVAAKDLID GEDLARFLSQ LHSDVSNLRA MLRAIYIAGH
201: ATESFSDFVV GHGELWSAQM LSYAIKKSGA PCSWMDTREV LVVKPSGCNQ VDPDYLESEK RLLKWFSRQP AEIIVATGFI ASTAENIPTT LKRDGSDFSA
301: AIVGSLVRAR QVTIWTDVDG VFSADPRKVS EAVILSTLSY QEAWEMSYFG ANVLHPRTII PVMKDNIPIV IRNMFNLSAS GTMICKQPAN ENGDLDACVK
401: SFATIDNLAL VNVEGTGMAG VPGTASAIFS TVKDVGANVI MISQASSEHS VCFAVPEKEV AAVSARLHDR FHEALAAGRL SKVEVINGCS ILAAVGLRMA
501: STPGVSAILF DALAKANINV RAIAQGCSEY NITVVLKQED CVRALRAAHS RFFLSKTTLA VGIIGPGLIG RTLLNQLKDQ VAALKENMNI DLRVIGITGS
601: STMLLSDTGI DLTQWKQLLK KEAEPADIDS FVHHLSDNHV FPNKVLVDCT ADTSVASHYY NWLKKGIHVI TPNKKANSGP LDQYLKLRTL QRASYTHYFY
701: EATVGAGLPI ISTLRGLLET GDKILRIEGI FSGTLSYIFN NFEGTRAFSD VVAEAKEAGY TEPDPRDDLS GTDVARKVII LARESGLRLE LSDIPVKSLV
801: PETLAACSSA DEFMQKLPSF DEDWARQRSD ADAADEVLRY VGVVDTVNKR GQVELRRYKR DHPFAQLSGS DNIIAFTTSR YKEQPLIVRG PGAGAEVTAG
901: GVFCDILRLA SYLGAPS

Best Arabidopsis Sequence Match ( AT4G19710.2 )
(BLAST)

001: MATLKPSFTV SPPNSNPIRF GSFPPQCFLR VPKPRRLILP RFRKTTGGGG GLIRCELPDF HLSATATTVS GVSTVNLVDQ VQIPKGEMWS VHKFGGTCVG
101: NSQRIRNVAE VIINDNSERK LVVVSAMSKV TDMMYDLIRK AQSRDDSYLS ALEAVLEKHR LTARDLLDGD DLASFLSHLH NDISNLKAML RAIYIAGHAS
201: ESFSDFVAGH GELWSAQMLS YVVRKTGLEC KWMDTRDVLI VNPTSSNQVD PDFGESEKRL DKWFSLNPSK IIIATGFIAS TPQNIPTTLK RDGSDFSAAI
301: MGALLRARQV TIWTDVDGVY SADPRKVNEA VILQTLSYQE AWEMSYFGAN VLHPRTIIPV MRYNIPIVIR NIFNLSAPGT IICQPPEDDY DLKLTTPVKG
401: FATIDNLALI NVEGTGMAGV PGTASDIFGC VKDVGANVIM ISQASSEHSV CFAVPEKEVN AVSEALRSRF SEALQAGRLS QIEVIPNCSI LAAVGQKMAS
501: TPGVSCTLFS ALAKANINVR AISQGCSEYN VTVVIKREDS VKALRAVHSR FFLSRTTLAM GIVGPGLIGA TLLDQLRDQA AVLKQEFNID LRVLGITGSK
601: KMLLSDIGID LSRWRELLNE KGTEADLDKF TQQVHGNHFI PNSVVVDCTA DSAIASRYYD WLRKGIHVIT PNKKANSGPL DQYLKLRDLQ RKSYTHYFYE
701: ATVGAGLPII STLRGLLETG DKILRIEGIC SGTLSYLFNN FVGDRSFSEV VTEAKNAGFT EPDPRDDLSG TDVARKVIIL ARESGLKLDL ADLPIRSLVP
801: EPLKGCTSVE EFMEKLPQYD GDLAKERLDA ENSGEVLRYV GVVDAVNQKG TVELRRYKKE HPFAQLAGSD NIIAFTTTRY KDHPLIVRGP GAGAQVTAGG
901: IFSDILRLAS YLGAPS

Arabidopsis Description

AKHSDH2Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O81852]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.